Spec SimpleSeed
Describes a seed with start and end position and diagonal upper and lower bounds.

Extends Seed
All Extended Seed
Defined in <seqan/seeds.h>
Signature template <[typename TConfig]> class Seed<Simple, TConfig>;

Template Parameters

TConfig The configuration to use. Defaults to DefaultSeedConfig.

Member Function Overview

Interface Function Overview

Interface Functions Inherited From Seed

Interface Metafunction Overview

Interface Metafunctions Inherited From Seed

Member Functions Detail

Seed::Seed(); Seed::Seed(beginPosH, beginPosV, length); Seed::Seed(beginPosH, beginPosV, endPosH, endPosV);

Constructor

Parameters

beginPosH The begin position in the horizontal position.
beginPosV The begin position in the vertical position.
length The length of the seed (in both directions).
endPosH The end position in the horizontal position.
endPosV The end position in the vertical position.

Data Races

Thread safety unknown!