alignment_result_type typedef | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | protected |
compute_column(alignment_column_t &&alignment_column, cell_index_column_t &&cell_index_column, alphabet1_t const &alphabet1, sequence2_t &&sequence2) | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | inlineprotected |
compute_matrix(sequence1_t &&sequence1, sequence2_t &&sequence2, alignment_matrix_t &&alignment_matrix, index_matrix_t &&index_matrix) | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | inlineprotected |
convert_batch_of_sequences_to_simd_vector(simd_sequence_t &simd_sequence, sequence_collection_t &sequences, padding_symbol_t const &padding_symbol) | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | inlineprotected |
initialise_column(alignment_column_t &&alignment_column, cell_index_column_t &&cell_index_column, sequence2_t &&sequence2) | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | inlineprotected |
operator()(indexed_sequence_pairs_t &&indexed_sequence_pairs, callback_t &&callback) | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | inline |
operator()(indexed_sequence_pairs_t &&indexed_sequence_pairs, callback_t &&callback) | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | inline |
operator=(pairwise_alignment_algorithm const &)=default | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | |
operator=(pairwise_alignment_algorithm &&)=default | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | |
pairwise_alignment_algorithm()=default | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | |
pairwise_alignment_algorithm(pairwise_alignment_algorithm const &)=default | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | |
pairwise_alignment_algorithm(pairwise_alignment_algorithm &&)=default | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | |
pairwise_alignment_algorithm(alignment_configuration_t const &config) | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | inline |
score_type typedef | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | protected |
traits_type typedef | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | protected |
~pairwise_alignment_algorithm()=default | seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > | |