SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t > Member List

This is the complete list of members for seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >, including all inherited members.

alignment_result_type typedefseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >protected
compute_column(alignment_column_t &&alignment_column, cell_index_column_t &&cell_index_column, alphabet1_t const &alphabet1, sequence2_t &&sequence2)seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >inlineprotected
compute_matrix(sequence1_t &&sequence1, sequence2_t &&sequence2, alignment_matrix_t &&alignment_matrix, index_matrix_t &&index_matrix)seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >inlineprotected
convert_batch_of_sequences_to_simd_vector(simd_sequence_t &simd_sequence, sequence_collection_t &sequences, padding_symbol_t const &padding_symbol)seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >inlineprotected
initialise_column(alignment_column_t &&alignment_column, cell_index_column_t &&cell_index_column, sequence2_t &&sequence2)seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >inlineprotected
operator()(indexed_sequence_pairs_t &&indexed_sequence_pairs, callback_t &&callback)seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >inline
operator()(indexed_sequence_pairs_t &&indexed_sequence_pairs, callback_t &&callback)seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >inline
operator=(pairwise_alignment_algorithm const &)=defaultseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
operator=(pairwise_alignment_algorithm &&)=defaultseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
pairwise_alignment_algorithm()=defaultseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
pairwise_alignment_algorithm(pairwise_alignment_algorithm const &)=defaultseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
pairwise_alignment_algorithm(pairwise_alignment_algorithm &&)=defaultseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
pairwise_alignment_algorithm(alignment_configuration_t const &config)seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >inline
score_type typedefseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >protected
traits_type typedefseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >protected
~pairwise_alignment_algorithm()=defaultseqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
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