SeqAn3  3.0.2
The Modern C++ library for sequence analysis.
debug_stream_alphabet.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
13 #pragma once
14 
19 
20 namespace seqan3
21 {
31 template <alphabet alphabet_t, typename char_t>
34  requires (!output_stream_over<std::basic_ostream<char_t>, alphabet_t>)
36 {
37  return s << to_char(l);
38 }
39 
46 template <typename char_t>
48 {
49  return s << (l == mask::MASKED ? "MASKED" : "UNMASKED");
50 }
51 
53 
54 } // namespace seqan3
mask.hpp
Create a mask composite which can be applied with another alphabet.
concept.hpp
Stream concepts.
output_stream_over
Concept for output streams.
seqan3::to_char
constexpr auto to_char
Return the char representation of an alphabet object.
Definition: concept.hpp:320
debug_stream_type.hpp
Provides seqan3::debug_stream and related types.
seqan3::mask
Implementation of a masked alphabet to be used for tuple composites.
Definition: mask.hpp:34
seqan3::debug_stream_type
A "pretty printer" for most SeqAn data structures and related types.
Definition: debug_stream_type.hpp:70
std::basic_ostream
seqan3
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:35
seqan3::operator<<
debug_stream_type< char_t > & operator<<(debug_stream_type< char_t > &stream, tuple_t &&alignment)
Stream operator for alignments, which are represented as tuples of aligned sequences.
Definition: aligned_sequence_concept.hpp:562
seqan3::mask::MASKED
static const mask MASKED
Definition: mask.hpp:61
concept.hpp
Core alphabet concept and free function/type trait wrappers.