Todo List

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Elaborate on that (space consumption for growing k, maybe a rule of thumb).

Add a description of the DREAM index here.

Member seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >::bi_fm_index (text_t &&text)

At least linear.

Member seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >::construct (text_t &&text)

This has to be better implemented with regard to the memory peak due to not matching interfaces with the SDSL.

At least linear.

Ensure strong exception guarantee.

Class seqan3::debug_stream_type< char_t >

implement.

Class seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >

Make this move-only after input iterators are allowed to be move-only.

Class seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >

Link to SDSL documentation or write our own once SDSL3 documentation is available somewhere....

Member seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >::construct (text_t &&text)

This has to be better implemented with regard to the memory peak due to not matching interfaces with the SDSL.

At least linear.

Ensure strong exception guarantee.

Member seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >::fm_index (text_t &&text)

At least linear.

Member seqan3::sdsl_wt_index_type

Asymptotic space consumption:

Page Sequence File Input and Output

There is no standard way for piping output ranges (e.g. fin | fout;), yet. Reevaluate this section later.

Interface simd_concept

Simplify concept to the seqan3::detail::simd_conceptonce gcc bug is fixed

Module utility_simd

Make this public again. We made this documentation internal-documentation only for the 3.0.0 release, because the API was not in shape yet. Remove /utility/simd/ exclusion from EXCLUDE_PATTERNS.

Describe more what SIMD is and how to use it.