SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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align_config_output.hpp
Go to the documentation of this file.
1// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
2// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
3// SPDX-License-Identifier: BSD-3-Clause
4
10#pragma once
11
16
17namespace seqan3::align_cfg
18{
19
40{
41public:
45 constexpr output_score() = default;
46 constexpr output_score(output_score const &) = default;
47 constexpr output_score(output_score &&) = default;
48 constexpr output_score & operator=(output_score const &) = default;
49 constexpr output_score & operator=(output_score &&) = default;
50 ~output_score() = default;
51
53
56 static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_score};
57};
58
84{
85public:
89 constexpr output_end_position() = default;
90 constexpr output_end_position(output_end_position const &) = default;
91 constexpr output_end_position(output_end_position &&) = default;
92 constexpr output_end_position & operator=(output_end_position const &) = default;
95
97
100 static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_end_position};
101};
102
128{
129public:
133 constexpr output_begin_position() = default;
134 constexpr output_begin_position(output_begin_position const &) = default;
139
141
144 static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_begin_position};
145};
146
168{
169public:
173 constexpr output_alignment() = default;
174 constexpr output_alignment(output_alignment const &) = default;
175 constexpr output_alignment(output_alignment &&) = default;
176 constexpr output_alignment & operator=(output_alignment const &) = default;
177 constexpr output_alignment & operator=(output_alignment &&) = default;
178 ~output_alignment() = default;
179
181
184 static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_alignment};
185};
186
208{
209public:
213 constexpr output_sequence1_id() = default;
214 constexpr output_sequence1_id(output_sequence1_id const &) = default;
215 constexpr output_sequence1_id(output_sequence1_id &&) = default;
216 constexpr output_sequence1_id & operator=(output_sequence1_id const &) = default;
219
223 static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_sequence1_id};
224};
225
247{
248public:
252 constexpr output_sequence2_id() = default;
253 constexpr output_sequence2_id(output_sequence2_id const &) = default;
254 constexpr output_sequence2_id(output_sequence2_id &&) = default;
255 constexpr output_sequence2_id & operator=(output_sequence2_id const &) = default;
258
260
263 static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_sequence2_id};
264};
265
266} // namespace seqan3::align_cfg
Provides some utility functions for the alignment configurations.
Provides seqan3::alignment_result.
Configures the alignment result to output the alignment.
Definition align_config_output.hpp:168
~output_alignment()=default
Defaulted.
constexpr output_alignment & operator=(output_alignment const &)=default
Defaulted.
constexpr output_alignment()=default
Defaulted.
constexpr output_alignment & operator=(output_alignment &&)=default
Defaulted.
constexpr output_alignment(output_alignment const &)=default
Defaulted.
constexpr output_alignment(output_alignment &&)=default
Defaulted.
Configures the alignment result to output the begin positions.
Definition align_config_output.hpp:128
constexpr output_begin_position & operator=(output_begin_position &&)=default
Defaulted.
constexpr output_begin_position()=default
Defaulted.
constexpr output_begin_position & operator=(output_begin_position const &)=default
Defaulted.
constexpr output_begin_position(output_begin_position &&)=default
Defaulted.
constexpr output_begin_position(output_begin_position const &)=default
Defaulted.
Configures the alignment result to output the end position.
Definition align_config_output.hpp:84
constexpr output_end_position(output_end_position const &)=default
Defaulted.
constexpr output_end_position(output_end_position &&)=default
Defaulted.
~output_end_position()=default
Defaulted.
constexpr output_end_position()=default
Defaulted.
constexpr output_end_position & operator=(output_end_position const &)=default
Defaulted.
constexpr output_end_position & operator=(output_end_position &&)=default
Defaulted.
Configures the alignment result to output the score.
Definition align_config_output.hpp:40
constexpr output_score & operator=(output_score const &)=default
Defaulted.
constexpr output_score()=default
Defaulted.
constexpr output_score(output_score const &)=default
Defaulted.
constexpr output_score & operator=(output_score &&)=default
Defaulted.
constexpr output_score(output_score &&)=default
Defaulted.
~output_score()=default
Defaulted.
Configures the alignment result to output the id of the first sequence.
Definition align_config_output.hpp:208
constexpr output_sequence1_id & operator=(output_sequence1_id &&)=default
Defaulted.
constexpr output_sequence1_id(output_sequence1_id const &)=default
Defaulted.
constexpr output_sequence1_id()=default
Defaulted.
~output_sequence1_id()=default
Defaulted.
constexpr output_sequence1_id(output_sequence1_id &&)=default
Defaulted.
constexpr output_sequence1_id & operator=(output_sequence1_id const &)=default
Defaulted.
Configures the alignment result to output the id of the second sequence.
Definition align_config_output.hpp:247
constexpr output_sequence2_id & operator=(output_sequence2_id &&)=default
Defaulted.
constexpr output_sequence2_id(output_sequence2_id &&)=default
Defaulted.
constexpr output_sequence2_id & operator=(output_sequence2_id const &)=default
Defaulted.
constexpr output_sequence2_id(output_sequence2_id const &)=default
Defaulted.
constexpr output_sequence2_id()=default
Defaulted.
~output_sequence2_id()=default
Defaulted.
A special sub namespace for the alignment configurations.
Definition align_config_band.hpp:22
Provides seqan3::pipeable_config_element.
Adds pipe interface to configuration elements.
Definition pipeable_config_element.hpp:29
Provides concepts that do not have equivalents in C++20.
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