SeqAn3  3.0.3
The Modern C++ library for sequence analysis.
seqan3::align_cfg::method_local Class Reference

Sets the local alignment method. More...

#include <seqan3/alignment/configuration/align_config_method.hpp>

+ Inheritance diagram for seqan3::align_cfg::method_local:

Public Member Functions

Constructors, destructor and assignment
 method_local ()=default
 Defaulted.
 
 method_local (method_local const &)=default
 Defaulted.
 
 method_local (method_local &&)=default
 Defaulted.
 
method_localoperator= (method_local const &)=default
 Defaulted.
 
method_localoperator= (method_local &&)=default
 Defaulted.
 
 ~method_local ()=default
 

Detailed Description

Sets the local alignment method.

The alignment algorithm can be categorised in different methods. For example, the local and the global alignment are two different methods, while the semi-global alignment is a variation of the global alignment. This differentiation makes it possible to define a subset of configurations that can work with a particular method. Since it is not possible to guess what the desired method for a user is, this configuration must be provided for the alignment algorithm and cannot be defaulted.

Example

Constructor & Destructor Documentation

◆ ~method_local()

seqan3::align_cfg::method_local::~method_local ( )
default

Defaulted.


The documentation for this class was generated from the following file:
debug_stream.hpp
Provides seqan3::debug_stream and related types.
dna4.hpp
Provides seqan3::dna4, container aliases and string literals.
align_pairwise.hpp
Provides pairwise alignment function.
align_config_method.hpp
Provides global and local alignment configurations.
seqan3::align_cfg::method_local
Sets the local alignment method.
Definition: align_config_method.hpp:43
align_config_scoring_scheme.hpp
Provides seqan3::align_cfg::scoring_scheme.
seqan3::nucleotide_scoring_scheme
A data structure for managing and computing the score of two nucleotides.
Definition: nucleotide_scoring_scheme.hpp:38
nucleotide_scoring_scheme.hpp
Provides seqan3::nucleotide_scoring_scheme.
seqan3::align_pairwise
constexpr auto align_pairwise(sequence_t &&seq, alignment_config_t const &config)
Computes the pairwise alignment for a pair of sequences or a range over sequence pairs.
Definition: align_pairwise.hpp:138
std::tie
T tie(T... args)
seqan3::mismatch_score
A strong type of underlying type score_type that represents the score two different characters.
Definition: scoring_scheme_base.hpp:66
seqan3::align_cfg::scoring_scheme
Sets the scoring scheme for the alignment algorithm.
Definition: align_config_scoring_scheme.hpp:45
seqan3::debug_stream
debug_stream_type debug_stream
A global instance of seqan3::debug_stream_type.
Definition: debug_stream.hpp:42
seqan3::match_score
A strong type of underlying type score_type that represents the score of two matching characters.
Definition: scoring_scheme_base.hpp:41