SeqAn3  3.0.2
The Modern C++ library for sequence analysis.
seqan3::quality_alphabet Interface Reference

A concept that indicates whether an alphabet represents quality scores. More...

#include <seqan3/alphabet/quality/concept.hpp>

+ Inheritance diagram for seqan3::quality_alphabet:

Related Functions

(Note that these are not member functions.)

Requirements for std::totally_ordered

You can expect these functions on all types that implement std::totally_ordered.

bool operator< (type const &lhs, type const &rhs)
 Less-than, greater-than and -or-equal comparisons. More...
 
bool operator<= (type const &lhs, type const &rhs)
 Less-than, greater-than and -or-equal comparisons. More...
 
bool operator> (type const &lhs, type const &rhs)
 Less-than, greater-than and -or-equal comparisons. More...
 
bool operator>= (type const &lhs, type const &rhs)
 Less-than, greater-than and -or-equal comparisons. More...
 
Requirements for std::equality_comparable

You can expect these functions on all types that implement std::Equality_comparable.

bool operator== (type const &lhs, type const &rhs)
 (In-)Equality comparison. More...
 
bool operator!= (type const &lhs, type const &rhs)
 (In-)Equality comparison. More...
 

Detailed Description

A concept that indicates whether an alphabet represents quality scores.

In addition to the requirements for seqan3::alphabet, the quality_alphabet introduces a requirement for conversion functions from and to a Phred score.

Concepts and doxygen

Requirements

  1. t shall model seqan3::alphabet
  2. seqan3::to_phred needs to be defined for objects of type t

See the documentation pages for the respective requirements.

Related types

If a given type t models this concept, the following types typically do so, as well:

  • t &
  • t const
  • t const &

The documentation for this interface was generated from the following file: