SeqAn3  3.0.2
The Modern C++ library for sequence analysis.
seqan3::align_cfg Namespace Reference

A special sub namespace for the alignment configurations. More...

Classes

struct  aligned_ends
 The configuration for aligned sequence ends. More...
 
struct  band
 Configuration element for setting the band. More...
 
struct  gap
 A configuration element for the gap scheme. More...
 
struct  max_error
 Sets the maximal errors allowed during an edit distance computation. More...
 
struct  mode
 Sets the alignment mode. More...
 
class  result
 Sets the result of the alignment computation. More...
 
struct  scoring
 Sets the scoring scheme for the alignment algorithm. More...
 

Typedefs

using parallel = seqan3::detail::parallel_mode< std::integral_constant< detail::align_config_id, detail::align_config_id::parallel > >
 Enables the parallel execution of the alignment algorithm if possible for the given configuration. More...
 

Variables

constexpr configuration edit
 Shortcut for edit distance configuration. More...
 
constexpr detail::vectorise_tag vectorise {}
 Enables the vectorised alignment computation if possible for the current configuration. More...
 

Detailed Description

A special sub namespace for the alignment configurations.