SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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sequence_file/output_options.hpp
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1// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
2// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
3// SPDX-License-Identifier: BSD-3-Clause
4
10#pragma once
11
13
14namespace seqan3
15{
16
23{
30 //TODO:
31 // bool fasta_charcounts = false;
32
34 bool fastq_double_id = false;
35
39 bool add_carriage_return = false;
40
43};
44
45} // namespace seqan3
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
Provides platform and dependency checks.
The options type defines various option members that influence the behaviour of all or some formats.
Definition sequence_file/output_options.hpp:23
uint32_t fasta_letters_per_line
Inserts linebreaks after every n-th letter in the sequence; 0 means no linebreaks.
Definition sequence_file/output_options.hpp:29
bool fasta_legacy_id_marker
Begin the ID line with ";" instead of ">" (not recommended).
Definition sequence_file/output_options.hpp:25
bool add_carriage_return
The default plain text line-ending is "\n", but on Windows an additional carriage return is recommend...
Definition sequence_file/output_options.hpp:39
bool embl_genbank_complete_header
Complete header given for embl or genbank.
Definition sequence_file/output_options.hpp:42
bool fasta_blank_before_id
Insert a single space after ">" (or ";") before the actual ID.
Definition sequence_file/output_options.hpp:27
bool fastq_double_id
Whether to write the ID only '@' or also after '+' line.
Definition sequence_file/output_options.hpp:34
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