23namespace seqan3::detail
36template <
typename format_type>
37struct structure_file_output_format_exposer :
public format_type
43 template <
typename... ts>
44 void write_structure_record(ts &&... args)
46 format_type::write_structure_record(std::forward<ts>(args)...);
69concept structure_file_output_format =
70 requires (detail::structure_file_output_format_exposer<t> & v,
72 structure_file_output_options & options,
86 v.write_structure_record(f, options,
seq,
id,
bpp,
structure,
energy,
react,
react_err,
comment,
offset)
87 } -> std::same_as<void>;
90 v.write_structure_record(f,
101 } -> std::same_as<void>;
104 v.write_structure_record(f,
115 } -> std::same_as<void>;
118 v.write_structure_record(f,
129 } -> std::same_as<void>;
135#if SEQAN3_DOXYGEN_ONLY(1) 0
203namespace seqan3::detail
212constexpr bool is_type_list_of_structure_file_output_formats_v =
false;
219template <
typename... ts>
220constexpr bool is_type_list_of_structure_file_output_formats_v<type_list<ts...>> =
221 (structure_file_output_format<ts> && ...);
229concept type_list_of_structure_file_output_formats = is_type_list_of_structure_file_output_formats_v<t>;
@ energy
Energy of a folded sequence, represented by one float number.
@ comment
Comment field of arbitrary content, usually a string.
@ structure
Fixed interactions, usually a string of structure alphabet characters.
@ bpp
Base pair probability matrix of interactions, usually a matrix of float numbers.
@ react
Reactivity values of the sequence characters given in a vector of float numbers.
@ react_err
Reactivity error values given in a vector corresponding to seqan3::field::react.
@ offset
Sequence (seqan3::field::seq) relative start position (0-based), unsigned value.
@ structured_seq
Sequence and fixed interactions combined in one range.
@ id
The identifier, usually a string.
@ seq
The "sequence", usually a range of nucleotides or amino acids.
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
Provides seqan3::rna5, container aliases and string literals.
Provides seqan3::structure_file_output_options.
Provides the composite of nucleotide with structure alphabets.
Provides seqan3::type_list.
Provides the WUSS format for RNA structure.