SeqAn3
The Modern C++ library for Sequence Analysis in Bioinformatics.
Class Index
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  a  
const_reference< rng_t > (seqan3)   InputRange (std::ranges)   Range (std::ranges)   structure_file_out (seqan3)   
constexpr_string (seqan3)   insertion (seqan3::search_cfg)   Readable (std)   structure_file_output_options (seqan3)   
aa10murphy (seqan3)   Constructible (std)   Integral (std)   aligned_allocator::rebind (seqan3)   structured_aa (seqan3)   
aa20 (seqan3)   container_concept (seqan3)   invalid_alignment_configuration (seqan3)   record (seqan3)   structured_rna (seqan3)   
aa27 (seqan3)   ContiguousIterator (std)   invalid_char_assignment (seqan3)   ref_info_not_given (seqan3)   StructureFileInputFormat (seqan3)   
aligned_allocator (seqan3)   ContiguousRange (std::ranges)   Invocable (std)   reference (seqan3)   StructureFileOutputFormat (seqan3)   
aligned_ends (seqan3::align_cfg)   ConvertibleTo (std)   is_aminoacid (seqan3)   reference< it_t > (seqan3)   substitution (seqan3::search_cfg)   
AlignedSequence (seqan3)   Copyable (std)   is_aminoacid< aa10murphy > (seqan3)   reference< rng_t > (seqan3)   Swappable (std)   
alignment_coordinate (seqan3)   CopyConstructible (std)   is_aminoacid< aa20 > (seqan3)   regex_validator (seqan3)   SwappableWith (std)   
alignment_file_format_sam (seqan3)   
  d  
is_aminoacid< aa27 > (seqan3)   Regular (std)   
  t  
alignment_file_header (seqan3)   IStream (seqan3)   RegularInvocable (std)   
alignment_file_input (seqan3)   debug_stream_type (seqan3)   Iterator (std)   Relation (std)   to_chars_result (std)   
alignment_file_input_default_traits (seqan3)   deep (seqan3::view)   iterator_tag (seqan3)   remove_rvalue_reference (seqan3)   too_few_arguments (seqan3)   
alignment_file_input_options (seqan3)   DefaultConstructible (std)   
  l  
required_option_missing (seqan3)   too_many_arguments (seqan3)   
alignment_file_output (seqan3)   delete_const (seqan3)   reservable_container_concept (seqan3)   total (seqan3::search_cfg)   
alignment_file_output_options (seqan3)   deletion (seqan3::search_cfg)   lower_bound (seqan3)   result (seqan3::align_cfg)   Trivial (seqan3)   
alignment_range (seqan3)   DerivedFrom (std)   
  m  
rna15 (seqan3)   TriviallyCopyable (seqan3)   
alignment_result (seqan3)   Destructible (std)   rna4 (seqan3)   TriviallyDestructible (seqan3)   
AlignmentFileInputFormat (seqan3)   difference_type (seqan3)   mask (seqan3)   rna5 (seqan3)   tuple_element< elem_no, seqan3::alignment_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > > (std)   
AlignmentFileInputTraits (seqan3)   difference_type< it_t > (seqan3)   masked (seqan3)   RnaStructureAlphabet (seqan3)   tuple_element< elem_no, seqan3::record< field_types, field_ids > > (std)   
AlignmentFileOutputFormat (seqan3)   difference_type< rng_t > (seqan3)   match_score (seqan3)   rvalue_reference (seqan3)   tuple_element< elem_no, seqan3::sequence_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > > (std)   
Alphabet (seqan3)   dna15 (seqan3)   max_error (seqan3::search_cfg)   rvalue_reference< it_t > (seqan3)   tuple_element< elem_no, seqan3::structure_file_in< traits_type, selected_field_ids, valid_formats, stream_char_t > > (std)   
alphabet_base (seqan3)   dna4 (seqan3)   max_error (seqan3::align_cfg)   rvalue_reference< rng_t > (seqan3)   tuple_element< i, tuple_t > (std)   
alphabet_base< derived_type, 1ul, char_t > (seqan3)   dna5 (seqan3)   max_error_rate (seqan3::search_cfg)   
  s  
tuple_like_concept (seqan3)   
alphabet_proxy (seqan3)   dot_bracket3 (seqan3)   max_pseudoknot_depth (seqan3)   tuple_size< seqan3::alignment_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > > (std)   
alphabet_size (seqan3)   dssp9 (seqan3)   max_pseudoknot_depth< alphabet_type_with_pseudoknot_attribute > (seqan3)   sam_tag_dictionary (seqan3)   tuple_size< seqan3::record< field_types, field_ids > > (std)   
alphabet_size< alphabet_type & > (seqan3)   
  e  
max_pseudoknot_depth< structure_type >   sam_tag_type (seqan3)   tuple_size< seqan3::sequence_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > > (std)   
alphabet_size< alphabet_type && > (seqan3)   mismatch_score (seqan3)   Same (std)   tuple_size< seqan3::structure_file_in< traits_type, selected_field_ids, valid_formats, stream_char_t > > (std)   
alphabet_size< alphabet_type_with_members > (seqan3)   end_gaps (seqan3)   mode (seqan3::search_cfg)   scoring (seqan3::align_cfg)   tuple_size< tuple_t > (std)   
alphabet_size< char_type > (seqan3)   EqualityComparable (std)   mode (seqan3::align_cfg)   scoring_scheme_base (seqan3)   type_conversion_failed (seqan3)   
alphabet_size< uint_type > (seqan3)   EqualityComparableWith (std)   Movable (std)   ScoringScheme (seqan3)   type_identity (std)   
aminoacid_base (seqan3)   ExplicitlyConvertibleTo (seqan3)   MoveConstructible (std)   Semialphabet (seqan3)   
  u  
aminoacid_scoring_scheme (seqan3)   
  f  
  n  
Semiregular (std)   
AminoacidAlphabet (seqan3)   Sentinel (std)   uint_adaptation_concept (seqan3)   
argument_parser (seqan3)   fields (seqan3)   nucleotide_base (seqan3)   sequence_container_concept (seqan3)   underlying_char (seqan3)   
argument_parser_meta_data (seqan3)   file_ext_validator (seqan3)   nucleotide_scoring_scheme (seqan3)   sequence_end_gap_specifier_base (seqan3)   underlying_char< alphabet_type & > (seqan3)   
Arithmetic (seqan3)   file_open_error (seqan3)   NucleotideAlphabet (seqan3)   sequence_file_format_embl (seqan3)   underlying_char< alphabet_type && > (seqan3)   
arithmetic_range_validator (seqan3)   FloatingPoint (seqan3)   
  o  
sequence_file_format_fasta (seqan3)   underlying_char< alphabet_type_with_members > (seqan3)   
Assignable (std)   fm_index (seqan3)   sequence_file_format_fastq (seqan3)   underlying_char< char_type > (seqan3)   
  b  
fm_index_cursor (seqan3)   option_declared_multiple_times (seqan3)   sequence_file_format_sam (seqan3)   underlying_char< uint_type > (seqan3)   
fm_index_default_traits (seqan3)   OStream (seqan3)   sequence_file_input (seqan3)   underlying_phred (seqan3)   
back_end_first (seqan3)   FmIndex (seqan3)   output (seqan3::search_cfg)   sequence_file_input_default_traits_aa (seqan3)   underlying_phred< alphabet_with_member_type > (seqan3)   
back_end_second (seqan3)   FmIndexCursor (seqan3)   OutputIterator (std)   sequence_file_input_default_traits_dna (seqan3)   underlying_rank (seqan3)   
band (seqan3::align_cfg)   FmIndexTraits (seqan3)   OutputRange (std::ranges)   sequence_file_input_options (seqan3)   underlying_rank< alphabet_type_with_members > (seqan3)   
bi_fm_index (seqan3)   format_error (seqan3)   overflow_error_on_conversion (seqan3)   sequence_file_output (seqan3)   underlying_rank< char_type > (seqan3)   
bi_fm_index_cursor (seqan3)   ForwardingRange (seqan3)   
  p  
sequence_file_output_options (seqan3)   underlying_rank< semi_alphabet_type & > (seqan3)   
bi_fm_index_default_traits (seqan3)   ForwardIterator (std)   SequenceFileInputFormat (seqan3)   underlying_rank< semi_alphabet_type && > (seqan3)   
BidirectionalIterator (std)   ForwardRange (std::ranges)   parse_asserter (seqan3)   SequenceFileInputTraits (seqan3)   underlying_rank< uint_type > (seqan3)   
BidirectionalRange (std::ranges)   from_chars_result (std)   parse_error (seqan3)   SequenceFileOutputFormat (seqan3)   unexpected_end_of_input (seqan3)   
BiFmIndex (seqan3)   front_end_first (seqan3)   parser_design_error (seqan3)   SignedIntegral (std)   unhandled_extension_error (seqan3)   
BiFmIndexCursor (seqan3)   front_end_second (seqan3)   parser_invalid_argument (seqan3)   simd_concept (seqan3::simd)   union_composition (seqan3)   
BiFmIndexTraits (seqan3)   
  g  
path_existence_validator (seqan3)   simd_traits (seqan3::simd)   unknown_option (seqan3)   
bitcompressed_vector (seqan3)   phred42 (seqan3)   simd_traits< builtin_simd_t > (seqan3::simd)   UnsignedIntegral (std)   
Boolean (std)   gap (seqan3::align_cfg)   phred63 (seqan3)   simd_type (seqan3::simd)   upper_bound (seqan3)   
  c  
gap (seqan3)   phred68legacy (seqan3)   size_type (seqan3)   
  v  
gap_decorator_anchor_set (seqan3)   pipeable_config_element (seqan3)   size_type< it_t > (seqan3)   
cartesian_composition (seqan3)   gap_erase_failure (seqan3)   plain_byte_alphabet (sdsl)   size_type< rng_t > (seqan3)   validation_failed (seqan3)   
cereal_text_archive_concept (seqan3)   gap_open_score (seqan3)   pod_tuple (seqan3)   SizedRange (std::ranges)   validator_concept (seqan3)   
CerealArchive (seqan3)   gap_scheme (seqan3)   pod_tuple< type0 > (seqan3)   SizedSentinel (std)   value_list_validator (seqan3)   
CerealInputArchive (seqan3)   gap_score (seqan3)   pod_tuple< type0, types... > (seqan3)   StandardLayout (seqan3)   value_type (seqan3)   
Cerealisable (seqan3)   GapScheme (seqan3)   Predicate (std)   static_band (seqan3)   value_type< it_t > (seqan3)   
CerealOutputArchive (seqan3)   
  h  
alignment_file_header::program_info_t (seqan3)   strata (seqan3::search_cfg)   value_type< rng_t > (seqan3)   
char_adaptation_concept (seqan3)   
  q  
Stream (seqan3)   View (std::ranges)   
char_concept (seqan3)   hash< alphabet_t > (std)   StrictTotallyOrdered (std)   ViewableRange (std::ranges)   
Common (std)   hash< urng_t > (std)   qualified (seqan3)   StrictTotallyOrderedWith (std)   
  w  
CommonRange (std::ranges)   
  i  
quality_base (seqan3)   StrictWeakOrder (std)   
CommonReference (std)   QualityAlphabet (seqan3)   structure_file_format_vienna (seqan3)   WeaklyAssignable (seqan3)   
compatible_concept (seqan3)   ImplicitlyConvertibleTo (seqan3)   
  r  
structure_file_in (seqan3)   WeaklyIncrementable (std)   
concatenated_sequences (seqan3)   Incrementable (std)   structure_file_input_default_traits_aa (seqan3)   WeaklyOrderedWith (seqan3)   
configuration (seqan3)   incrementable_traits (std)   random_access_container_concept (seqan3)   structure_file_input_default_traits_rna (seqan3)   Writable (std)   
const_iterable_concept (seqan3)   innermost_value_type (seqan3)   RandomAccessIterator (std)   structure_file_input_options (seqan3)   wuss (seqan3)   
const_reference (seqan3)   InputIterator (std)   RandomAccessRange (std::ranges)   structure_file_input_traits_concept (seqan3)   
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