66 constexpr
dna4() noexcept =
default;
67 constexpr
dna4(
dna4 const &) noexcept =
default;
68 constexpr
dna4(
dna4 &&) noexcept =
default;
71 ~dna4() noexcept =
default;
76 template <std::Same<rna4> t>
77 constexpr
dna4(t
const & r) noexcept
105 ret[ rank_to_char[rnk] ] = rnk;
106 ret[
to_lower(rank_to_char[rnk])] = rnk;
110 ret[
'U'] = ret[
'T']; ret[
'u'] = ret[
't'];
113 ret[
'R'] = ret[
'A']; ret[
'r'] = ret[
'A'];
114 ret[
'Y'] = ret[
'C']; ret[
'y'] = ret[
'C'];
115 ret[
'S'] = ret[
'C']; ret[
's'] = ret[
'C'];
116 ret[
'W'] = ret[
'A']; ret[
'w'] = ret[
'A'];
117 ret[
'K'] = ret[
'G']; ret[
'k'] = ret[
'G'];
118 ret[
'M'] = ret[
'A']; ret[
'm'] = ret[
'A'];
119 ret[
'B'] = ret[
'C']; ret[
'b'] = ret[
'C'];
120 ret[
'D'] = ret[
'A']; ret[
'd'] = ret[
'A'];
121 ret[
'H'] = ret[
'A']; ret[
'h'] = ret[
'A'];
122 ret[
'V'] = ret[
'A']; ret[
'v'] = ret[
'A'];
152 constexpr
dna4 operator""_dna4(
char const c) noexcept
171 for (
size_t i = 0; i < n; ++i)
172 r[i].assign_char(s[i]);
The four letter DNA alphabet of A,C,G,T.
Definition: dna4.hpp:48
constexpr dna4(t const &r) noexcept
Allow implicit construction from dna/rna of the same size.
Definition: dna4.hpp:77
constexpr dna4() noexcept=default
Defaulted.
The main SeqAn3 namespace.
constexpr dna4 & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition: alphabet_base.hpp:166
Provides seqan3::nucleotide_base.
static detail::min_viable_uint_t< size > constexpr alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:175
The four letter RNA alphabet of A,C,G,U.
Definition: rna4.hpp:46
~dna4() noexcept=default
Defaulted.
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:40
constexpr derived_type & assign_char(char_type const c) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:141
constexpr dna4 & operator=(dna4 const &) noexcept=default
Defaulted.
std::conditional_t< std::Same< char, void >, char, char > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:61
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:82