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class | seqan3::alignment_file_header< ref_ids_type > |
| Stores the header information of alignment files. More...
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class | seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ > |
| A class for reading alignment files, e.g. SAM, BAM, BLAST ... More...
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struct | seqan3::alignment_file_input_default_traits< ref_sequences_t, ref_ids_t > |
| The default traits for seqan3::alignment_file_input. More...
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struct | seqan3::alignment_file_input_options< sequence_legal_alphabet > |
| The options type defines various option members that influence the behaviour of all or some formats. More...
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class | seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_char_type_, ref_ids_type > |
| A class for writing alignment files, e.g. SAM, BAL, BLAST, ... More...
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struct | seqan3::alignment_file_output_options |
| The options type defines various option members that influence the behavior of all or some formats. More...
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interface | seqan3::AlignmentFileInputFormat |
| The generic concept for alignment file input formats. More...
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interface | seqan3::AlignmentFileInputTraits |
| The requirements a traits_type for seqan3::alignment_file_input must meet. More...
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interface | seqan3::AlignmentFileOutputFormat |
| The generic concept for alignment file out formats. More...
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struct | seqan3::format_bam |
| The BAM format. More...
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struct | seqan3::format_sam |
| The SAM format (tag). More...
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struct | std::tuple_element< elem_no, seqan3::alignment_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > > |
| Obtains the type of the specified element. More...
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struct | std::tuple_size< seqan3::alignment_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > > |
| Provides access to the number of elements in a tuple as a compile-time constant expression. More...
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Provides files and formats for handling alignment data.