detail.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/core/algorithm/configuration_utility.hpp>
 
namespace seqan3::detail
{
 
enum struct align_config_id : uint8_t
{
    aligned_ends, 
    band,         
    debug,        
    gap,          
    global,       
    local,        
    max_error,    
    parallel,     
    result,       
    scoring,      
    vectorise,    
    SIZE          
};
 
// ----------------------------------------------------------------------------
// compatibility_table
// ----------------------------------------------------------------------------
 
template <>
inline constexpr std::array<std::array<bool, static_cast<uint8_t>(align_config_id::SIZE)>,
                            static_cast<uint8_t>(align_config_id::SIZE)> compatibility_table<align_config_id>
{
    {   //0  1  2  3  4  5  6  7  8  9 10
        { 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1}, //  0: aligned_ends
        { 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1}, //  1: band
        { 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1}, //  2: debug
        { 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1}, //  3: gap
        { 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1}, //  4: global
        { 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1}, //  5: local
        { 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1}, //  6: max_error
        { 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1}, //  7: parallel
        { 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1}, //  8: result
        { 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1}, //  9: scoring
        { 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0}  // 10: vectorise
    }
};
 
} // namespace seqan3::detail