SeqAn3  3.0.1
The Modern C++ library for sequence analysis.

alignment → core Relation

File in seqan3/alignmentIncludes file in seqan3/core
aligned_sequence / aligned_sequence_concept.hpptype_traits / all.hpp
aligned_sequence / aligned_sequence_concept.hppdetail / debug_stream_type.hpp
aligned_sequence / aligned_sequence_concept.hppconcept / tuple.hpp
exception.hppplatform.hpp
band / static_band.hppalgorithm / bound.hpp
configuration / align_config_aligned_ends.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_aligned_ends.hppdetail / pack_algorithm.hpp
configuration / align_config_aligned_ends.hpptype_traits / basic.hpp
configuration / align_config_aligned_ends.hpptype_traits / template_inspection.hpp
configuration / align_config_band.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_debug.hppalgorithm / configuration_element_debug_mode.hpp
configuration / align_config_debug.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_edit.hppalgorithm / configuration.hpp
configuration / align_config_gap.hpptype_traits / basic.hpp
configuration / align_config_gap.hpptype_traits / template_inspection.hpp
configuration / align_config_gap.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_max_error.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_mode.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_parallel.hppalgorithm / configuration_element_parallel_mode.hpp
configuration / align_config_result.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_result.hppconcept / core_language.hpp
configuration / align_config_scoring.hpptype_traits / basic.hpp
configuration / align_config_scoring.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_vectorise.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_vectorise.hppdetail / empty_type.hpp
configuration / detail.hppalgorithm / configuration_utility.hpp
matrix / detail / aligned_sequence_builder.hpptype_traits / concept.hpp
matrix / detail / aligned_sequence_builder.hpptype_traits / lazy.hpp
matrix / detail / alignment_matrix_column_major_range_base.hpptype_traits / basic.hpp
matrix / detail / alignment_matrix_column_major_range_base.hpptype_traits / range.hpp
matrix / detail / alignment_score_matrix_one_column.hppconcept / core_language.hpp
matrix / detail / alignment_score_matrix_one_column.hppsimd / concept.hpp
matrix / detail / alignment_score_matrix_one_column_base.hppconcept / core_language.hpp
matrix / detail / alignment_score_matrix_one_column_base.hppsimd / concept.hpp
matrix / detail / alignment_score_matrix_proxy.hppconcept / core_language.hpp
matrix / detail / alignment_score_matrix_proxy.hppsimd / concept.hpp
matrix / detail / alignment_trace_matrix_base.hppsimd / concept.hpp
matrix / detail / alignment_trace_matrix_proxy.hppsimd / concept.hpp
matrix / detail / matrix_coordinate.hppconcept / core_language.hpp
matrix / detail / matrix_coordinate.hppdetail / strong_type.hpp
matrix / detail / two_dimensional_matrix.hpptype_traits / deferred_crtp_base.hpp
matrix / detail / two_dimensional_matrix.hpptype_traits / template_inspection.hpp
matrix / detail / two_dimensional_matrix_iterator_base.hpptype_traits / basic.hpp
matrix / detail / two_dimensional_matrix_iterator_base.hpptype_traits / iterator.hpp
pairwise / detail / alignment_algorithm_state.hppconcept / core_language.hpp
pairwise / detail / alignment_algorithm_state.hppsimd / concept.hpp
pairwise / detail / concept.hppconcept / tuple.hpp
pairwise / detail / type_traits.hppalgorithm / configuration.hpp
pairwise / detail / type_traits.hppbit_manipulation.hpp
pairwise / detail / type_traits.hppsimd / simd_traits.hpp
pairwise / detail / type_traits.hppsimd / simd.hpp
pairwise / detail / type_traits.hpptype_traits / template_inspection.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hppconcept / cereal.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hppsimd / concept.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hppsimd / simd_algorithm.hpp
scoring / detail / simd_matrix_scoring_scheme.hppconcept / cereal.hpp
scoring / detail / simd_matrix_scoring_scheme.hppsimd / concept.hpp
scoring / detail / simd_matrix_scoring_scheme.hppsimd / simd_algorithm.hpp
pairwise / execution / alignment_executor_two_way.hppparallel / execution.hpp
pairwise / execution / alignment_executor_two_way.hpptype_traits / range.hpp
pairwise / execution / execution_handler_parallel.hppparallel / detail / reader_writer_manager.hpp
pairwise / execution / execution_handler_parallel.hppplatform.hpp
pairwise / execution / execution_handler_sequential.hppplatform.hpp
matrix / alignment_coordinate.hppdetail / debug_stream_tuple.hpp
matrix / alignment_coordinate.hppdetail / debug_stream_type.hpp
matrix / alignment_coordinate.hppdetail / strong_type.hpp
matrix / alignment_coordinate.hpptype_traits / template_inspection.hpp
matrix / alignment_optimum.hppconcept / core_language.hpp
matrix / alignment_optimum.hpptype_traits / template_inspection.hpp
matrix / alignment_optimum.hppsimd / concept.hpp
matrix / alignment_optimum.hppsimd / simd_algorithm.hpp
matrix / alignment_optimum.hppsimd / simd_traits.hpp
matrix / alignment_trace_algorithms.hpptype_traits / range.hpp
matrix / debug_matrix.hppdetail / debug_stream_alphabet.hpp
matrix / debug_matrix.hppdetail / debug_stream_range.hpp
matrix / debug_matrix.hppdetail / debug_stream_type.hpp
matrix / debug_matrix.hppdetail / debug_stream_optional.hpp
matrix / debug_matrix.hpptype_traits / template_inspection.hpp
matrix / edit_distance_score_matrix_full.hppbit_manipulation.hpp
matrix / edit_distance_trace_matrix_full.hppbit_manipulation.hpp
matrix / trace_directions.hppadd_enum_bitwise_operators.hpp
matrix / trace_directions.hppdetail / debug_stream_type.hpp
pairwise / align_pairwise.hppalgorithm / all.hpp
pairwise / align_pairwise.hppparallel / execution.hpp
pairwise / align_pairwise.hppsimd / simd_traits.hpp
pairwise / align_pairwise.hppsimd / simd.hpp
pairwise / align_pairwise.hpptype_traits / basic.hpp
pairwise / align_result_selector.hppalgorithm / configuration.hpp
pairwise / align_result_selector.hpptype_traits / basic.hpp
pairwise / align_result_selector.hpptype_traits / range.hpp
pairwise / align_result_selector.hpptype_traits / template_inspection.hpp
pairwise / align_result_selector.hpptype_traits / transformation_trait_or.hpp
pairwise / align_result_selector.hpptype_list / traits.hpp
pairwise / align_result_selector.hpptype_list / type_list.hpp
pairwise / alignment_algorithm.hppdetail / empty_type.hpp
pairwise / alignment_algorithm.hppsimd / concept.hpp
pairwise / alignment_algorithm.hppsimd / simd.hpp
pairwise / alignment_algorithm.hppsimd / simd_traits.hpp
pairwise / alignment_algorithm.hppsimd / view_to_simd.hpp
pairwise / alignment_algorithm.hpptype_traits / deferred_crtp_base.hpp
pairwise / alignment_configurator.hppconcept / tuple.hpp
pairwise / alignment_configurator.hppsimd / simd.hpp
pairwise / alignment_configurator.hpptype_traits / deferred_crtp_base.hpp
pairwise / alignment_configurator.hpptype_traits / lazy.hpp
pairwise / alignment_configurator.hpptype_traits / template_inspection.hpp
pairwise / alignment_configurator.hpptype_list / type_list.hpp
pairwise / alignment_result.hpptype_traits / template_inspection.hpp
pairwise / edit_distance_fwd.hppbit_manipulation.hpp
pairwise / edit_distance_fwd.hppplatform.hpp
pairwise / edit_distance_fwd.hpptype_traits / deferred_crtp_base.hpp
pairwise / edit_distance_unbanded.hppalgorithm / configuration.hpp
pairwise / policy / affine_gap_policy.hppconcept / core_language.hpp
pairwise / policy / alignment_matrix_policy.hpptype_traits / basic.hpp
pairwise / policy / scoring_scheme_policy.hppplatform.hpp
pairwise / policy / simd_affine_gap_policy.hppalgorithm / configuration.hpp
pairwise / policy / simd_affine_gap_policy.hppconcept / core_language.hpp
pairwise / policy / simd_affine_gap_policy.hppsimd / concept.hpp
pairwise / policy / simd_affine_gap_policy.hppsimd / simd_algorithm.hpp
pairwise / policy / simd_affine_gap_policy.hppsimd / simd_traits.hpp
pairwise / policy / simd_find_optimum_policy.hppdetail / empty_type.hpp
pairwise / policy / simd_find_optimum_policy.hppsimd / concept.hpp
scoring / gap_scheme.hppconcept / cereal.hpp
scoring / gap_scheme.hppconcept / core_language.hpp
scoring / gap_scheme.hppdetail / strong_type.hpp
scoring / scoring_scheme_base.hppconcept / cereal.hpp
scoring / scoring_scheme_base.hppconcept / core_language.hpp
scoring / scoring_scheme_base.hppdetail / strong_type.hpp