SeqAn3
3.0.1
The Modern C++ library for sequence analysis.
alignment → std Relation
File in seqan3/alignment
Includes file in seqan3/std
aligned_sequence
/
aligned_sequence_concept.hpp
ranges
band
/
static_band.hpp
concepts
matrix
/
detail
/
aligned_sequence_builder.hpp
concepts
matrix
/
detail
/
aligned_sequence_builder.hpp
ranges
matrix
/
detail
/
alignment_matrix_column_major_range_base.hpp
iterator
matrix
/
detail
/
alignment_matrix_column_major_range_base.hpp
ranges
matrix
/
detail
/
alignment_matrix_column_major_range_base.hpp
span
matrix
/
detail
/
alignment_score_matrix_one_column.hpp
iterator
matrix
/
detail
/
alignment_score_matrix_one_column.hpp
ranges
matrix
/
detail
/
alignment_score_matrix_one_column.hpp
span
matrix
/
detail
/
alignment_score_matrix_one_column_banded.hpp
iterator
matrix
/
detail
/
alignment_score_matrix_one_column_banded.hpp
ranges
matrix
/
detail
/
alignment_score_matrix_one_column_banded.hpp
span
matrix
/
detail
/
alignment_trace_matrix_full.hpp
iterator
matrix
/
detail
/
alignment_trace_matrix_full.hpp
ranges
matrix
/
detail
/
alignment_trace_matrix_full_banded.hpp
iterator
matrix
/
detail
/
alignment_trace_matrix_full_banded.hpp
ranges
matrix
/
detail
/
alignment_trace_matrix_proxy.hpp
concepts
matrix
/
detail
/
matrix_coordinate.hpp
concepts
matrix
/
detail
/
trace_iterator_base.hpp
concepts
matrix
/
detail
/
trace_iterator_base.hpp
ranges
matrix
/
detail
/
two_dimensional_matrix.hpp
algorithm
matrix
/
detail
/
two_dimensional_matrix.hpp
ranges
matrix
/
detail
/
two_dimensional_matrix_iterator_base.hpp
concepts
matrix
/
detail
/
two_dimensional_matrix_iterator_base.hpp
ranges
matrix
/
detail
/
two_dimensional_matrix_iterator_concept.hpp
concepts
matrix
/
detail
/
two_dimensional_matrix_iterator_concept.hpp
iterator
pairwise
/
detail
/
concept.hpp
ranges
pairwise
/
detail
/
type_traits.hpp
ranges
scoring
/
detail
/
simd_match_mismatch_scoring_scheme.hpp
concepts
scoring
/
detail
/
simd_matrix_scoring_scheme.hpp
concepts
pairwise
/
execution
/
alignment_executor_two_way.hpp
ranges
pairwise
/
execution
/
execution_handler_parallel.hpp
concepts
pairwise
/
execution
/
execution_handler_parallel.hpp
ranges
pairwise
/
execution
/
execution_handler_sequential.hpp
concepts
pairwise
/
execution
/
execution_handler_sequential.hpp
ranges
matrix
/
alignment_coordinate.hpp
concepts
matrix
/
alignment_coordinate.hpp
iterator
matrix
/
alignment_optimum.hpp
concepts
matrix
/
matrix_concept.hpp
concepts
pairwise
/
align_pairwise.hpp
concepts
pairwise
/
align_pairwise.hpp
ranges
pairwise
/
align_result_selector.hpp
ranges
pairwise
/
alignment_algorithm.hpp
iterator
pairwise
/
alignment_algorithm.hpp
ranges
pairwise
/
alignment_range.hpp
concepts
pairwise
/
alignment_range.hpp
ranges
pairwise
/
edit_distance_fwd.hpp
concepts
pairwise
/
edit_distance_fwd.hpp
ranges
pairwise
/
edit_distance_unbanded.hpp
ranges
scoring
/
aminoacid_scoring_scheme.hpp
algorithm
scoring
/
gap_scheme.hpp
concepts
scoring
/
scoring_scheme_base.hpp
algorithm
seqan3
alignment
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