Provides helper data structures for the seqan3::alignment_file_output. More...
#include <seqan3/core/add_enum_bitwise_operators.hpp>
#include <seqan3/core/detail/debug_stream_type.hpp>
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Classes | |
struct | seqan3::ref_info_not_given |
Type tag which indicates that no reference information has been passed to the alignment file on construction. More... | |
Namespaces | |
seqan3 | |
The main SeqAn3 namespace. | |
Enumerations | |
enum | seqan3::sam_flag : uint16_t { seqan3::sam_flag::none = 0, seqan3::sam_flag::paired = 0x1, seqan3::sam_flag::proper_pair = 0x2, seqan3::sam_flag::unmapped = 0x4, seqan3::sam_flag::mate_unmapped = 0x8, seqan3::sam_flag::on_reverse_strand = 0x10, seqan3::sam_flag::mate_on_reverse_strand = 0x20, seqan3::sam_flag::first_in_pair = 0x40, seqan3::sam_flag::second_in_pair = 0x80, seqan3::sam_flag::secondary_alignment = 0x100, seqan3::sam_flag::failed_filter = 0x200, seqan3::sam_flag::duplicate = 0x400, seqan3::sam_flag::supplementary_alignment = 0x800 } |
An enum flag that describes the properties of an aligned read (given as a SAM record). More... | |
Variables | |
template<> | |
constexpr bool | seqan3::add_enum_bitwise_operators< sam_flag > = true |
Enables bitwise operations for seqan3::sam_flags. | |
Provides helper data structures for the seqan3::alignment_file_output.