A special sub namespace for the alignment configurations. More...
Classes | |
struct | aligned_ends |
The configuration for aligned sequence ends. More... | |
struct | band |
Configuration element for setting the band. More... | |
struct | gap |
A configuration element for the gap scheme. More... | |
struct | max_error |
Sets the maximal errors allowed during an edit distance computation. More... | |
struct | mode |
Sets the alignment mode. More... | |
class | result |
Sets the result of the alignment computation. More... | |
struct | scoring |
Sets the scoring scheme for the alignment algorithm. More... | |
Typedefs | |
using | parallel = seqan3::detail::parallel_mode< std::integral_constant< detail::align_config_id, detail::align_config_id::parallel > > |
Enables the parallel execution of the alignment algorithm if possible for the given configuration. More... | |
Variables | |
constexpr configuration | edit |
Shortcut for edit distance configuration. More... | |
constexpr detail::vectorise_tag | vectorise {} |
Enables the vectorised alignment computation if possible for the current configuration. More... | |
A special sub namespace for the alignment configurations.