translation.hpp File Reference

Provides functions for translating a triplet of nucleotides into an amino acid. More...

#include <tuple>
#include <seqan3/alphabet/aminoacid/aa27.hpp>
#include <seqan3/alphabet/aminoacid/translation_genetic_code.hpp>
#include <seqan3/alphabet/aminoacid/translation_details.hpp>
#include <seqan3/core/type_traits/range.hpp>

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Namespaces
	seqan3
	The main SeqAn3 namespace.

Functions
template<genetic_code gc = genetic_code::CANONICAL, nucleotide_alphabet nucl_type>
constexpr aa27	seqan3::translate_triplet (nucl_type const &n1, nucl_type const &n2, nucl_type const &n3) noexcept
	Translate one nucleotide triplet into single amino acid (single nucleotide interface). More...
template<genetic_code gc = genetic_code::CANONICAL, std::ranges::input_range range_type>
constexpr aa27	seqan3::translate_triplet (range_type &&input_range)
	Translate one nucleotide triplet into single amino acid (range interface). More...
template<genetic_code gc = genetic_code::CANONICAL, std::ranges::random_access_range rng_t>
constexpr aa27	seqan3::translate_triplet (rng_t &&input_range)
	Translate one nucleotide triplet into single amino acid (range interface, input range allows random access). More...
template<genetic_code gc = genetic_code::CANONICAL, typename tuple_type >
constexpr aa27	seqan3::translate_triplet (tuple_type const &input_tuple) noexcept
	Translate one nucleotide triplet into single amino acid (tuple interface). More...

Detailed Description

Provides functions for translating a triplet of nucleotides into an amino acid.

Author

Sara Hetzel <sara.hetzel AT fu-berlin.de>