SeqAn3  3.0.1
The Modern C++ library for sequence analysis.
translation_genetic_code.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
13 #pragma once
14 
15 #include <seqan3/core/platform.hpp>
16 
17 namespace seqan3
18 {
25 enum struct genetic_code : uint8_t
26 {
27  CANONICAL=1,
28 // VERT_MITOCHONDRIAL,
29 // YEAST_MITOCHONDRIAL,
30 // MOLD_MITOCHONDRIAL,
31 // INVERT_MITOCHONDRIAL,
32 // CILIATE,
33 // FLATWORM_MITOCHONDRIAL = 9,
34 // EUPLOTID,
35 // PROKARYOTE,
36 // ALT_YEAST,
37 // ASCIDIAN_MITOCHONDRIAL,
38 // ALT_FLATWORM_MITOCHONDRIAL,
39 // BLEPHARISMA,
40 // CHLOROPHYCEAN_MITOCHONDRIAL,
41 // TREMATODE_MITOCHONDRIAL = 21,
42 // SCENEDESMUS_MITOCHONDRIAL,
43 // THRAUSTOCHYTRIUM_MITOCHONDRIAL,
44 // PTEROBRANCHIA_MITOCHONDRIAL,
45 // GRACILIBACTERIA
46 };
47 }
seqan3::genetic_code
genetic_code
Genetic codes used for translation of nucleotides into amino acids.
Definition: translation_genetic_code.hpp:25
seqan3
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:36
platform.hpp
Provides platform and dependency checks.