detail.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/core/algorithm/configuration_utility.hpp>
 
namespace seqan3::detail
{
 
// ----------------------------------------------------------------------------
// search_config_id
// ----------------------------------------------------------------------------
 
enum struct search_config_id : uint8_t
{
    max_error_total, 
    max_error_substitution, 
    max_error_insertion, 
    max_error_deletion, 
    on_result, 
    output_query_id, 
    output_reference_id, 
    output_reference_begin_position, 
    output_index_cursor, 
    hit, 
    parallel, 
    result_type, 
    // ATTENTION: Must always be the last item; will be used to determine the number of ids.
    SIZE 
};
 
// ----------------------------------------------------------------------------
// search_config_validation_matrix
// ----------------------------------------------------------------------------
 
template <>
inline constexpr std::array<std::array<bool, static_cast<uint8_t>(search_config_id::SIZE)>,
                            static_cast<uint8_t>(search_config_id::SIZE)> compatibility_table<search_config_id> =
{
    {
       // max_error_total,
       // |  max_error_substitution,
       // |  |  max_error_insertion,
       // |  |  |  max_error_deletion,
       // |  |  |  |  on_result,
       // |  |  |  |  |  output_query_id,
       // |  |  |  |  |  |  output_reference_id,
       // |  |  |  |  |  |  |  output_reference_begin_position,
       // |  |  |  |  |  |  |  |  output_index_cursor,
       // |  |  |  |  |  |  |  |  |  hit,
       // |  |  |  |  |  |  |  |  |  |  parallel,
       // |  |  |  |  |  |  |  |  |  |  |  result_type
        { 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_total
        { 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_substitution
        { 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_insertion
        { 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_deletion
        { 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1}, // on_result
        { 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1}, // output_query_id
        { 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1}, // output_reference_id
        { 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1}, // output_reference_begin_position
        { 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1}, // output_index_cursor
        { 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1}, // hit
        { 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1}, // parallel
        { 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0}  // result_type
    }
};
 
} // namespace seqan3::detail