Spec
Bed5RecordBedRecord with 5 fields.
BedRecord with 5 fields.
Extends | Bed4Record |
---|---|
All Extended | Bed3Record, Bed4Record, BedRecord |
All Subcl's | Bed6Record |
All Impl'd | AssignableConcept, CopyConstructibleConcept, DefaultConstructibleConcept, FormattedFileRecordConcept |
Defined in | <seqan/bed_io.h> |
Signature |
template <>
class BedRecord<Bed5>;
|
Member Function Overview
Member Functions Inherited From BedRecord
Member Functions Inherited From AssignableConcept
Interface Function Overview
Interface Functions Inherited From BedRecord
Interface Functions Inherited From AssignableConcept
Member Variable Overview
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CharString Bed5Record::score
The score of the interval (stored as CharString to allow more flexible annotation).
Member Variables Inherited From Bed4Record
Member Variables Inherited From BedRecord
Detailed Description
This BedRecord specialization stores the first five fields (ref, beginPos, endPos, name, score) of a BED file.
Member Variables Detail
CharString Bed5Record::score
The score of the interval (stored as CharString to allow more flexible annotation).
Remarks
Storing the score as a CharString is provided for compatibility with bedtools.