Spec
Rna5Alphabet for RNA including 'N' character.
Alphabet for RNA including 'N' character.
Extends | SimpleType |
---|---|
All Extended | SimpleType |
All Impl'd | AlphabetConcept, AssignableConcept, ComparableConcept, CopyConstructibleConcept, DefaultConstructibleConcept, EqualityComparableConcept, FiniteOrderedAlphabetConcept, LessThanComparableConcept, OrderedAlphabetConcept |
Defined in | <seqan/basic.h> |
Signature |
typedef SimpleType<unsigned char, Rna5_> Rna5;
|
Member Function Overview
Member Functions Inherited From SimpleType
Member Functions Inherited From AssignableConcept
Member Functions Inherited From ComparableConcept
Member Functions Inherited From EqualityComparableConcept
Member Functions Inherited From LessThanComparableConcept
Member Functions Inherited From OrderedAlphabetConcept
Interface Function Overview
Interface Functions Inherited From AssignableConcept
Interface Functions Inherited From ComparableConcept
Interface Functions Inherited From FiniteOrderedAlphabetConcept
Interface Functions Inherited From OrderedAlphabetConcept
Interface Metafunction Overview
Interface Metafunctions Inherited From AlphabetConcept
Interface Metafunctions Inherited From FiniteOrderedAlphabetConcept
Interface Metafunctions Inherited From OrderedAlphabetConcept
Detailed Description
The ValueSize of Rna5 is 5. The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'U' = 3. The 'N' character ("unkown nucleotide") is encoded by 4.
Objects of type Rna5 can be converted to various other types and vice versa. An object that has a value not in {'A', 'C', 'G', 'U'} is converted to 'N'.