Class PigeonholeParameters
Parameters for the pigeonhole filter algorithm.

Defined in <seqan/index/find_pigeonhole.h>
Signature struct PigeonholeParameters;

Member Function Overview

Member Variable Overview

See Also

Member Functions Detail


Default constructor.

Initializes all member variables, default values are given in the variable documentation.

Data Races

If not stated otherwise, concurrent invocation is not guaranteed to be thread-safe.

Member Variables Detail

bool PigeonholeParameters::debug

Whether to print debug information, defaults to false.

unsigned PigeonholeParameters::delta

Delta length, becomes index step site; defaults to 0.

A value of 0 means that the delta will be auto-detected.

unsigned PigeonholeParameters::overlap

Overlap length of adjacent q-grams, default is to use non-overlappling q-grams (= 0).

bool PigeonholeParameters::printDots

Whether to print dots for the scanning progress, defaults to false.