Class SwiftParameters
Parameters for the SWIFT algorithm.

Defined in <seqan/index.h>
Signature struct SwiftParameters;

Member Function Overview

Member Variable Overview

See Also

Member Functions Detail


Default constructor.

Initializes all member variables, default values are given in the variable documentation.

Data Races

If not stated otherwise, concurrent invocation is not guaranteed to be thread-safe.

Member Variables Detail

bool SwiftParameters::debug

Whether to print debug information, defaults to false.

int SwiftParameters::minLog2Delta

Minimal delta to use, defaults to 16.

int SwiftParameters::minThreshold

Minimal threshold to use initially, defaults to 1.

bool SwiftParameters::printDots

Whether to print dots for the scanning progress, defaults to false.

int SwiftParameters::tabooLength

Taboo length to use, defaults to 1.