fn() upgmaTree
Computes a guide tree from a distance matrix.

Defined in <seqan/graph_msa.h>
Signature void upgmaTree(mat, tree[, tag]);


mat A matrix with pairwise distance values. Can be a String representing a (dense) square matrix or a UndirectedGraph where each edge weight corresponds to the distance between sequence i and j (if the edge is present).
tree An undirected guide tre.
tag Tag indicating how to calcualte the cluster distances. See: UpgmaConfiguratorTags. Default: UpgmaWeightAvg.

Data Races

If not stated otherwise, concurrent invocation is not guaranteed to be thread-safe.