Spec Bed5Record
BedRecord with 5 fields.

Extends Bed4Record
All Extended Bed3Record, Bed4Record, BedRecord
All Subcl's Bed6Record
All Impl'd AssignableConcept, CopyConstructibleConcept, DefaultConstructibleConcept, FormattedFileRecordConcept
Defined in <seqan/bed_io.h>
Signature template <> class BedRecord<Bed5>;

Member Function Overview

Member Functions Inherited From BedRecord

Member Functions Inherited From AssignableConcept

Interface Function Overview

Interface Functions Inherited From BedRecord

Interface Functions Inherited From AssignableConcept

Member Variable Overview

Member Variables Inherited From Bed4Record

Member Variables Inherited From BedRecord

Detailed Description

This BedRecord specialization stores the first five fields (ref, beginPos, endPos, name, score) of a BED file.

Member Variables Detail

CharString Bed5Record::score

The score of the interval (stored as CharString to allow more flexible annotation).


Storing the score as a CharString is provided for compatibility with bedtools.