Tag Murphy10Specialization for ReducedAminoAcid#
Specialization for ReducedAminoAcid#
Defined in | seqan/reduced_aminoacid.h |
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Signature |
typedef Murphy10 Tag<Murphy10_>;
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Detailed Description
This is the 10-character reduction defined by Murphy et al, 2000, https://www.ncbi.nlm.nih.gov/pubmed/10775656
This alphabet is used by many tools, e.g. Rapsearch2, Lambda, UBlast.
Since it was created from the 20-letter alphabet the clusters in SeqAn are not identical (they contain more symbols). This is the clustering:
'A', // A O U X 'B', // B D E N Q Z 'C', // C 'F', // F W Y * 'G', // G 'H', // H 'I', // I J L M V 'K', // K R 'P', // P 'S' // S T