Spec GlobalChain
Selects an anchor-based method to join a JournaledString to a global reference sequence.

Extends JoinConfig
All Extended JoinConfig
Defined in <seqan/journaled_set.h>
Signature template <[typename TStrategy]> struct GlobalChain;

Template Parameters

TStrategy The strategy used to compute the journal (can be one of JournaledCompact and JournaledManhattan, defaults to JournaledManhattan).

Detailed Description

The JournaledManhattan strategy fills the gaps between the anchors with a single insertion node whil the corresponding part of the reference sequence is deleted.