align_config_edit.hpp

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// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <seqan3/alignment/configuration/align_config_gap_cost_affine.hpp>
#include <seqan3/alignment/configuration/align_config_scoring_scheme.hpp>
#include <seqan3/alignment/scoring/hamming_scoring_scheme.hpp>
#include <seqan3/core/configuration/configuration.hpp>
 
namespace seqan3::align_cfg
{
 
inline constexpr configuration edit_scheme =
    scoring_scheme{hamming_scoring_scheme{}} | gap_cost_affine{open_score{0}, extension_score{-1}};
 
} // namespace seqan3::align_cfg