align_config_scoring_scheme.hpp

Go to the documentation of this file.

// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <concepts>
 
#include <seqan3/alignment/configuration/detail.hpp>
#include <seqan3/alignment/scoring/scoring_scheme_concept.hpp>
#include <seqan3/core/configuration/pipeable_config_element.hpp>
#include <seqan3/utility/type_traits/basic.hpp>
 
namespace seqan3::align_cfg
{
 
template <std::semiregular scoring_scheme_t>
class scoring_scheme : private pipeable_config_element
{
public:
    scoring_scheme_t scheme{};
 
    constexpr scoring_scheme() = default;                                   
    constexpr scoring_scheme(scoring_scheme const &) = default;             
    constexpr scoring_scheme(scoring_scheme &&) = default;                  
    constexpr scoring_scheme & operator=(scoring_scheme const &) = default; 
    constexpr scoring_scheme & operator=(scoring_scheme &&) = default;      
    ~scoring_scheme() = default;                                            
 
    explicit constexpr scoring_scheme(scoring_scheme_t scheme) : scheme{std::move(scheme)}
    {}
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::scoring};
};
 
template <typename scheme_t>
scoring_scheme(scheme_t) -> scoring_scheme<std::remove_cvref_t<scheme_t>>;
 
} // namespace seqan3::align_cfg