seqan3::align_cfg::score_type< score_t > Class Template Reference

A configuration element to set the score type used in the alignment algorithm. More...

#include <seqan3/alignment/configuration/align_config_score_type.hpp>

Inheritance diagram for seqan3::align_cfg::score_type< score_t >:

Public Types
using	type = score_t
	The selected score type.

Public Member Functions
Constructor, destructor and assignment
constexpr	score_type ()=default
	Defaulted.
constexpr	score_type (score_type const &)=default
	Defaulted.
constexpr	score_type (score_type &&)=default
	Defaulted.
constexpr score_type &	operator= (score_type const &)=default
	Defaulted.
constexpr score_type &	operator= (score_type &&)=default
	Defaulted.
	~score_type ()=default
	Defaulted.

Detailed Description

template<arithmetic score_t>
class seqan3::align_cfg::score_type< score_t >

A configuration element to set the score type used in the alignment algorithm.

Template Parameters

score_t

The type to use for the computed alignment score; must model seqan3::arithmetic.

This option configures the score type of the alignment algorithm. By default, the alignment algorithm will only compute the score with score type int32_t.

Example

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alignment/configuration/align_config_score_type.hpp>
#include <seqan3/core/configuration/configuration.hpp>
 
int main()
{
    // Compute only the score.
    seqan3::configuration cfg1 =
        seqan3::align_cfg::score_type<int16_t>{};                        // Now the alignment computes 16 bit integers.
    seqan3::configuration cfg2 = seqan3::align_cfg::score_type<float>{}; // Now the alignment computes float scores.
}

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The documentation for this class was generated from the following file:

• align_config_score_type.hpp