HIBF
1.0.0-rc.1
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Class Hierarchy
Go to the graphical class hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level
1
2
3
]
C
seqan::hibf::bin_count
A strong type that represents the number of bins for the
seqan::hibf::interleaved_bloom_filter
C
seqan::hibf::bin_index
A strong type that represents the bin index for the
seqan::hibf::interleaved_bloom_filter
C
seqan::hibf::bin_size
A strong type that represents the number of bits for each bin in the
seqan::hibf::interleaved_bloom_filter
C
seqan::hibf::build::bin_size_parameters
Contains parameters for bin_size_in_bits
C
seqan::hibf::build::build_data
Contains information used for building
▼
C
seqan::hibf::cerealisable
C
seqan::hibf::interleaved_bloom_filter
The IBF binning directory. A data structure that efficiently answers set-membership queries for multiple bins
C
seqan::hibf::sketch::toolbox::clustering_node
Type for a node in the clustering tree when for the rearrangement
C
seqan::hibf::concurrent_timer
A timer with a thread-safe
operator+=()
C
seqan::hibf::config
The configuration used to build an (H)IBF
C
seqan::hibf::hierarchical_interleaved_bloom_filter::counting_agent_type< value_t >
Manages counting ranges of values for the
seqan::hibf::hierarchical_interleaved_bloom_filter
C
seqan::hibf::interleaved_bloom_filter::counting_agent_type< value_t >
Manages counting ranges of values for the
seqan::hibf::interleaved_bloom_filter
C
seqan::hibf::layout::data_store
Contains information used for the layout
C
seqan::hibf::sketch::toolbox::entry
Entry of the distance matrix that has the id of a cluster with its neighbors in a prio queue
C
seqan::hibf::layout::fpr_correction_parameters
Contains parameters for compute_fpr_correction
C
seqan::hibf::layout::graph
Contains the layout graph structure
C
seqan::hibf::hash_function_count
A strong type that represents the number of hash functions for the
seqan::hibf::interleaved_bloom_filter
C
seqan::hibf::layout::hierarchical_binning
Hierarchical binning algorithm
C
seqan::hibf::hierarchical_interleaved_bloom_filter
The Hierarchical Interleaved Bloom Filter (HIBF) - Fast answers to set-membership queries for multiple bins
C
seqan::hibf::sketch::hyperloglog
HyperLogLog estimates
C
seqan::hibf::insert_iterator
C
seqan::hibf::layout::layout
The layout
C
seqan::hibf::layout::layout::max_bin
C
seqan::hibf::hierarchical_interleaved_bloom_filter::membership_agent_type
C
seqan::hibf::interleaved_bloom_filter::membership_agent_type
Manages membership queries for the
seqan::hibf::interleaved_bloom_filter
C
seqan::hibf::sketch::minhashes
MinHash sketches design to be used for Locality sensitive hashing
C
seqan::hibf::sketch::toolbox::neighbor
Element of the second priority queue layer of the distance matrix
C
seqan::hibf::layout::graph::node
C
seqan::hibf::layout::data_store::previous_level
Stores information of the previous level of a given IBF
C
seqan::hibf::print_t
C
seqan::hibf::serial_timer
A timer
C
seqan::hibf::layout::simple_binning
Distributes x Technical Bins across y User Bins while minimizing the maximal Technical Bin size
C
seqan::hibf::layout::layout::user_bin
▼
C
std::vector
[external]
C
seqan::hibf::md_vector< int64_t >
C
seqan::hibf::md_vector< uint64_t >
▼
C
std::vector< std::vector< value_t > >
[external]
C
seqan::hibf::md_vector< value_t >
▼
C
std::vector< uint64_t, std::allocator_traits< seqan::hibf::contrib::aligned_allocator< bool, 64u > >::template rebind_alloc< uint64_t > >
[external]
▼
C
seqan::hibf::bit_vector
An bit vector
C
seqan::hibf::interleaved_bloom_filter
The IBF binning directory. A data structure that efficiently answers set-membership queries for multiple bins
▼
C
std::vector< value_t, seqan::hibf::contrib::aligned_allocator< value_t, 64u > >
[external]
C
seqan::hibf::counting_vector< value_t >
A data structure that behaves like a
std::vector
and can be used to consolidate the results of multiple calls to
seqan::hibf::interleaved_bloom_filter::membership_agent_type::bulk_contains
Generated on Thu Aug 29 2024 00:01:59 for HIBF by
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