File List

Here is a list of all documented files with brief descriptions:

[detail level 1234]

▼ raptor
► argument_parsing
build_arguments.hpp	Provides raptor::build_arguments
build_parsing.hpp	Provides raptor::build_parsing
compute_bin_size.hpp	Provides raptor::compute_bin_size and raptor::max_bin_count
cpu_time.hpp	Provides raptor::get_cpu_time
formatted_bytes.hpp	Provides raptor::formatted_bytes
formatted_index_size.hpp	Provides raptor::formatted_index_size
inspect_arguments.hpp	Provides raptor::inspect_arguments
inspect_parsing.hpp	Provides raptor::inspect_parsing
memory_usage.hpp	Provides raptor::formatted_peak_ram
parse_bin_path.hpp	Provides raptor::parse_bin_path
prepare_arguments.hpp	Provides raptor::prepare_arguments
prepare_parsing.hpp	Provides raptor::prepare_parsing
search_arguments.hpp	Provides raptor::search_arguments
search_parsing.hpp	Provides raptor::search_parsing
shared.hpp	Provides raptor::validate_shape
to_bytes.hpp	Provides raptor::to_bytes
update_arguments.hpp	Provides raptor::update_arguments
update_parsing.hpp	Provides raptor::update_parsing
upgrade_arguments.hpp	Provides raptor::upgrade_arguments
upgrade_parsing.hpp	Provides raptor::upgrade_parsing
validators.hpp	Provides various validator
► build
build_hibf.hpp	Provides raptor::build_ibf
build_ibf.hpp	Provides raptor::build_ibf
emplace_iterator.hpp	Provides raptor::emplace_iterator
index_factory.hpp	Provides raptor::index_factory
max_count_per_partition.hpp	Provides raptor::max_count_per_partition
partition_config.hpp	Provides raptor::partition_config
raptor_build.hpp	Provides raptor::raptor_build
store_index.hpp	Provides raptor::store_index
► inspect
inspect.hpp	Provides raptor::raptor_inspect
json_writer.hpp	Provides raptor::json_writer
► layout
raptor_layout.hpp	Provides raptor::chopper_layout
► prepare
compute_minimiser.hpp	Provides raptor::compute_minimiser
cutoff.hpp	Provides raptor::cutoff
► search
► fpga
min_ibf_fpga_oneapi.hpp
search_fpga.hpp	Provides raptor::search_fpga
do_parallel.hpp	Provides raptor::do_parallel
load_index.hpp	Provides raptor::load_index
search.hpp	Provides raptor::raptor_search
search_hibf.hpp	Provides raptor::search_hibf
search_ibf.hpp	Provides raptor::search_ibf
search_partitioned_hibf.hpp	Provides raptor::search_partitioned_hibf
search_partitioned_ibf.hpp	Provides raptor::search_partitioned_ibf
search_singular_ibf.hpp	Provides raptor::search_singular_ibf
sync_out.hpp	Provides raptor::sync_out
► threshold
forward_strand_minimiser.hpp	Provides raptor::threshold::forward_strand_minimiser
logspace.hpp	Provides functionality for working with probabilities in logspace
multiple_error_model.hpp	Provides raptor::threshold::multiple_error_model
one_error_model.hpp	Provides raptor::threshold::one_error_model
one_indirect_error_model.hpp	Provides raptor::threshold::one_indirect_error_model
pascal_row.hpp	Provides raptor::threshold::pascal_row
precompute_correction.hpp	Provides raptor::threshold::precompute_correction
precompute_threshold.hpp	Provides raptor::threshold::precompute_threshold
threshold.hpp	Provides raptor::threshold::threshold
threshold_parameters.hpp	Provides raptor::threshold::threshold_parameters
► update
delete_user_bins.hpp	Provides raptor::delete_user_bins
dump_index.hpp	Provides raptor::dump_index
insert_user_bin.hpp	Provides raptor::insert_user_bin
update.hpp	Provides raptor::raptor_update
► upgrade
index_upgrader.hpp	Provides raptor::index_upgrader
upgrade.hpp	Provides raptor::raptor_upgrade
adjust_seed.hpp	Provides raptor::adjust_seed
call_parallel_on_bins.hpp	Provides raptor::call_parallel_on_bins
dna4_traits.hpp	Provides raptor::dna4_traits
file_reader.hpp	Provides raptor::file_reader
index.hpp	Provides raptor::raptor_index
raptor.hpp	Provides raptor callable
strong_types.hpp	Provides raptor::window
version.hpp	Provides RAPTOR version macros and global variables
▼ src
► argument_parsing
build_arguments.cpp	Implements raptor::build_arguments
build_parsing.cpp	Implements raptor::build_parsing
compute_bin_size.cpp	Implements raptor::compute_bin_size and raptor::max_bin_count
inspect_parsing.cpp	Implements raptor::inspect_parsing
parse_bin_path.cpp	Implements raptor::parse_bin_path
prepare_parsing.cpp	Implements raptor::prepare_parsing
search_arguments.cpp	Implements raptor::search_arguments
search_parsing.cpp	Implements raptor::search_parsing
update_arguments.cpp	Implements raptor::update_arguments
update_parsing.cpp	Implements raptor::update_parsing
upgrade_parsing.cpp	Implements raptor::upgrade_parsing
► build
build_hibf.cpp	Implements raptor::build_hibf
build_ibf.cpp	Implements raptor::build_ibf
max_count_per_partition.cpp	Implements raptor::max_count_per_partition
raptor_build.cpp	Implements raptor::raptor_build
► inspect
index_metadata.cpp	Implements raptor::detail::read_index_metadata
index_metadata.hpp	Provides raptor::detail::index_metadata and raptor::detail::read_index_metadata
json_writer.cpp	Implements raptor::json_writer
raptor_inspect.cpp	Implements raptor::raptor_inspect
write_metadata.cpp	Implements raptor::detail::write_text and raptor::detail::write_json
write_metadata.hpp	Provides raptor::detail::write_text and raptor::detail::write_json
► layout
raptor_layout.cpp	Implements raptor::chopper_layout
► prepare
compute_minimiser.cpp	Implements raptor::compute_minimiser
► search
raptor_search.cpp	Implements raptor::raptor_search
search_hibf.cpp	Implements raptor::search_hibf
search_ibf.cpp	Implements raptor::search_ibf
search_partitioned_ibf.cpp	Implements raptor::search_partitioned_ibf
► threshold
multiple_error_model.cpp	Implements raptor::threshold::multiple_error_model
one_error_model.cpp	Implements raptor::threshold::one_error_model
one_indirect_error_model.cpp	Implements raptor::threshold::one_indirect_error_model
pascal_row.cpp	Implements raptor::threshold::pascal_row
precompute_correction.cpp	Implements raptor::threshold::precompute_correction
precompute_threshold.cpp	Implements raptor::threshold::precompute_threshold
threshold.cpp	Implements raptor::threshold::threshold
► update
► insert
get_location.cpp	Implements raptor::detail::get_location
insert_tb_and_parents.cpp	Implements raptor::detail::insert_tb_and_parents
is_fpr_exceeded.hpp	Provides raptor::detail::is_fpr_exceeded
strong_types.hpp	Provides the helper types shared by the raptor::insert_user_bin implementation
delete_user_bins.cpp	Implements raptor::delete_user_bins
dump_index.cpp	Implements raptor::dump_index
insert_user_bin.cpp	Implements raptor::insert_user_bin
raptor_update.cpp	Implements raptor::raptor_update
subtree.hpp	Provides helpers to traverse and retire subtrees of an HIBF
► upgrade
raptor_upgrade.cpp	Implements raptor::raptor_upgrade
raptor.cpp	Implements raptor