Class Specialization
TraceBackGotoh
Trace back values for gotoh.
TraceBackGotoh |
Specialization of
Implements
Metafunctions
Tests type to be simple. (SimpleType) | |
The spec of a class. (SimpleType) | |
Type of the items in the container. (SimpleType) |
Functions
Assigns one object to another object. (SimpleType) | |
Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType) |
Remarks
The ValueSize of TraceBackGotoh is 12.
The values are defined in the following way: Move in Diagonal Matrix, Move in Horizontal Matrix, Move in Vertical Matrix
The values are:
0=Diag, Diag, Diag; 1=Diag, Diag, Vert; 2=Diag, Hori, Diag; 3=Diag, Hori, Vert;
4=Hori, Diag, Diag; 5=Hori, Diag, Vert; 6=Hori, Hori, Diag; 7=Hori, Hori, Vert;
8=Vert, Diag, Diag; 9=Vert, Diag, Vert; 10=Vert, Hori, Diag; 11=Vert, Hori, Vert;
12 = Stop (For SmithWaterman Traceback)
See Also
SeqAn - Sequence Analysis Library - www.seqan.de