Function
chain
Computes the chain on a set of fragments.
chain(source, dest, score [, algorithm])
Parameters
source
The set of fragments
dest
A destination container.
score
The penalties for gaps between fragments.
Remarks: Values should be positive integers.
algorithm
A tag that identifies the algorithm which is used for chaining.
Values: Default: Compiler selects best algorithm.
GenericChaining: A simple generic chaining algorithm.
RangetreeChaining: An elaborated chaining algorithm for Score Zero, Score Manhattan, and Score ChainSoP scoring schemes.
Default: Default
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