Function
createCountArray
Builds an index on a StringSet storing how often a q-gram occurs in each sequence.
createCountsArray(counts, dir, stringSet, shape)
Parameters
stringSet
The StringSet.
Types: StringSet
shape
The shape to be used.
Types: Shape
Return Values
counts
The resulting list of pairs (seqNo,count).
dir
The resulting array that indicates at which position in the count table the corresponding a certain q-gram can be found.
SeqAn - Sequence Analysis Library - www.seqan.de