Class Specialization
BasicInfo
Stores only the basic pieces of information delivered with an alignment in a Blast report.
BlastHsp
BasicInfo
BasicInfo
Specialization of
Functions
getAlignmentTurns a HSP from a Blast search into an Alignment object. (BlastHsp)
getDatabaseBeginThe begin position of the HSP on the database sequence. (BlastHsp)
getDatabaseEndThe end position of the HSP on the database sequence. (BlastHsp)
getEValueThe e-value associated with a Blast HSP. (BlastHsp)
getQueryBeginThe begin position of the HSP on the query sequence. (BlastHsp)
getQueryEndThe end position of the HSP on the query sequence. (BlastHsp)
lengthThe number of items/characters. (BlastHsp)
Example Programs
Include Headers
blast.h
SeqAn - Sequence Analysis Library - www.seqan.de