Class Specialization
CMode
Represents the C ("constant") computation scheme for handling "zero" probabilities.
Pseudocount
CMode
Pseudocount<TValue, CMode>
Parameters
TValue
The type of sequence which is considered.
Types: AminoAcid, Dna
Specialization of
Pseudocount
Metafunctions
ValueType of the items in the container. (Pseudocount)
Functions
convertSetOfPatternsToProfileConverts a set of sequence patterns into a profile. (Pseudocount)
normalizeDetermines the normalized frequencies. (Pseudocount)
Remarks
The pseudocount is identical for each residue (pseudocount = epsilon/alphabet_size).
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