Class Specialization
TraceBackGotoh
Trace back values for gotoh.
Simple Type
SimpleType
TraceBackGotoh
TraceBackGotoh
Specialization of
Implements
Metafunctions
IsSimpleTests type to be simple. (SimpleType)
SpecThe spec of a class. (SimpleType)
ValueType of the items in the container. (SimpleType)
Functions
assignAssigns one object to another object. (SimpleType)
ordValueMaps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)
Remarks
The ValueSize of TraceBackGotoh is 12. The values are defined in the following way: Move in Diagonal Matrix, Move in Horizontal Matrix, Move in Vertical Matrix The values are: 0=Diag, Diag, Diag; 1=Diag, Diag, Vert; 2=Diag, Hori, Diag; 3=Diag, Hori, Vert; 4=Hori, Diag, Diag; 5=Hori, Diag, Vert; 6=Hori, Hori, Diag; 7=Hori, Hori, Vert; 8=Vert, Diag, Diag; 9=Vert, Diag, Vert; 10=Vert, Hori, Diag; 11=Vert, Hori, Vert; 12 = Stop (For SmithWaterman Traceback)
See Also
SeqAn - Sequence Analysis Library - www.seqan.de