Concept
Container
Object that contains other objects.
Concept Definition
Required Metafunctions
Type for reading values. | |
Type of an object that represents a position in a container. | |
Reference type. | |
Type of an object that is suitable to hold size information. | |
Type of the items in the container. |
Required Functions
Concatenate two containers. | |
Appends a value to a container. | |
Assigns one object to another object. | |
Assigns value to item. | |
Assigns value to item. | |
The begin of a container. | |
Begin position of object in host. | |
The maximal length. | |
The end of a container. | |
End position of object in host. | |
Access to the value. | |
The number of items/characters. | |
Assigns value to item. | |
Replaces a part of a container with another container. | |
Reference to the value. |
Implemented by
Allows to modify arbitrary strings by specializing what differs from an origin. | |
General purpose container for sequences. |
Used By Function
Functions
Adds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails. | |
Extension of seeds. | |
Extension of seeds with score calculation. | |
Extension of seeds with score calculation. | |
Creates a matrix storing the number of common q-grams between all pairs of sequences. | |
Creates a matrix storing the number of common q-grams between all pairs of sequences. | |
Reverse an object/container in-place. |
SeqAn - Sequence Analysis Library - www.seqan.de