Class Specialization
Rna5
Alphabet for RNA including 'N' character.
Include Headers
seqan/basic.h
Remarks
The ValueSize of Rna5 is 5.
The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'U' = 3 .
The 'N' character ("unkown nucleotide") is encoded by 4.
Objects of type Rna5 can be converted to various other types and vice versa.
An object that has a value not in {'A', 'C', 'G', 'U'} is converted to 'N' .
Specialization of
Implements
Metafunctions
Tests type to be simple. (SimpleType) | |
The spec of a class. (SimpleType) | |
Type of the items in the container. (SimpleType) |
Functions
Assigns one object to another object. (SimpleType) | |
Assigns one object to another object. (SimpleType) | |
Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType) |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de