Class
GapAnchorStores the position of an alignment character in sequence-space and gap-space in AnchorGaps.
Stores the position of an alignment character in sequence-space and gap-space in AnchorGaps.
Implements | ComparableConcept |
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All Impl'd | ComparableConcept, EqualityComparableConcept, LessThanComparableConcept |
Defined in | <seqan/align.h> |
Signature |
template <typename TPosition>
struct GapAnchor;
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Template Parameters
TPos |
Type to store gapped/ungapped positions. |
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Member Function Overview
Member Functions Inherited From ComparableConcept
Member Functions Inherited From EqualityComparableConcept
Member Functions Inherited From LessThanComparableConcept
Interface Function Overview
Interface Functions Inherited From ComparableConcept
Member Variable Overview
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TPos GapAnchor::gapPos
Sequence character position in the gapped sequence. -
TPos GapAnchor::seqPos
Sequence character position in the ungapped sequence.
Detailed Description
Remarks
Used as value type for the gaps strings in ReadStoreElement and ContigStoreElement.
See Also
Member Functions Detail
GapAnchor::GapAnchor([other]);
GapAnchor::GapAnchor(seqPos, gapPos);
Constructor.
Parameters
other
|
GapAnchor object to copy from. |
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seqPos
|
Sequence character position in the ungapped sequence (of type TPos). |
gapPos
|
Sequence character position in the gapped sequence (of type TPos). |
Remarks
The default constructor sets both positions to 0.
Data Races
Thread safety unknown!
Member Variables Detail
TPos GapAnchor::gapPos
Sequence character position in the gapped sequence.
TPos GapAnchor::seqPos
Sequence character position in the ungapped sequence.