seqan3::_best_score | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::_best_score | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
_best_score_col | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
_score | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
_score_matrix | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | protected |
_trace_matrix | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
add_state() | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
advance_score(word_type P, word_type N, word_type mask) noexcept | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
seqan3::align_config_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::align_config_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::align_config_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::align_config_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::align_config_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
alignment() const noexcept | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inline |
seqan3::alignment_result_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::alignment_result_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::alignment_result_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::alignment_result_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::alignment_result_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::alignment_traits_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::alignment_traits_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::alignment_traits_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::alignment_traits_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::alignment_traits_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
base_t typedef | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
begin_positions() const noexcept | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inline |
bit_masks | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
compute() | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
seqan3::compute_begin_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_begin_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_begin_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_begin_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_begin_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_empty_query_sequence() | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
seqan3::compute_end_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_end_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_end_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_end_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_end_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_kernel(compute_state &state, size_t const block_offset, size_t const current_block) noexcept | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
seqan3::compute_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::compute_score | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_score | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_score | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_score | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_score | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::compute_score_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_score_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_score_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_score_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_score_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::compute_sequence_alignment | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_sequence_alignment | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_sequence_alignment | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_sequence_alignment | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_sequence_alignment | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_step(compute_state &state) noexcept | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivatestatic |
seqan3::compute_trace_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_trace_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_trace_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_trace_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_trace_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
config | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
database | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
database_it | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
database_it_end | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
seqan3::database_iterator typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::database_iterator typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::database_iterator typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::database_iterator typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::database_iterator typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::database_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::database_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::database_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::database_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::database_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
db | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
seqan3::derived_t | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::derived_t | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::derived_t | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::derived_t | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_max_errors_policy::derived_t | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded()=delete | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | |
edit_distance_unbanded(edit_distance_unbanded const &)=default | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | |
edit_distance_unbanded(edit_distance_unbanded &&)=default | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | |
edit_distance_unbanded(database_t _database, query_t _query, align_config_t _config, edit_traits const &_traits) | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inline |
edit_distance_unbanded(database_t &&database, query_t &&query, config_t config, traits_t) -> edit_distance_unbanded< database_t, query_t, config_t, traits_t > | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | related |
edit_distance_unbanded_global_policy | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | friend |
seqan3::detail::edit_distance_unbanded_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded_max_errors_policy | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | friend |
seqan3::detail::edit_distance_unbanded_max_errors_policy::edit_distance_unbanded_max_errors_policy(edit_distance_unbanded_max_errors_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_max_errors_policy::edit_distance_unbanded_max_errors_policy(edit_distance_unbanded_max_errors_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded_score_matrix_policy | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | friend |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::edit_distance_unbanded_score_matrix_policy(edit_distance_unbanded_score_matrix_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::edit_distance_unbanded_score_matrix_policy(edit_distance_unbanded_score_matrix_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded_semi_global_policy | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | friend |
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_semi_global_policy(edit_distance_unbanded_semi_global_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_semi_global_policy(edit_distance_unbanded_semi_global_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded_trace_matrix_policy | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | friend |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::edit_distance_unbanded_trace_matrix_policy(edit_distance_unbanded_trace_matrix_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::edit_distance_unbanded_trace_matrix_policy(edit_distance_unbanded_trace_matrix_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
seqan3::end_positions() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inline |
seqan3::detail::edit_distance_unbanded_semi_global_policy::end_positions() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inline |
seqan3::end_positions_first() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inlineprotected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::end_positions_first() const noexcept | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | inlineprotected |
hn0 | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | privatestatic |
hp | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
hp0 | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | privatestatic |
seqan3::invalid_coordinate() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inlineprotected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::invalid_coordinate() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inlineprotected |
seqan3::is_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::is_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::is_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::is_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::is_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
is_last_active_cell_within_last_row() const noexcept | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | inlineprotected |
seqan3::is_semi_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::is_semi_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::is_semi_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::is_semi_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::is_semi_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::is_valid() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inlineprotected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::is_valid() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inlineprotected |
large_patterns() | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
last_block | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
last_score_mask | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
max_errors | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
max_errors_init(size_t block_count) noexcept | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | inlineprotected |
max_rows(word_type const score_mask, unsigned const last_block, score_type const score, score_type const max_errors) noexcept | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | inlineprotectedstatic |
next_last_active_cell() noexcept | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | inlineprotected |
on_hit() noexcept | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
operator()(size_t const idx, callback_t &&callback) | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inline |
operator=(edit_distance_unbanded const &)=default | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | |
operator=(edit_distance_unbanded &&)=default | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | |
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::operator=(edit_distance_unbanded_semi_global_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::operator=(edit_distance_unbanded_semi_global_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::operator=(edit_distance_unbanded_score_matrix_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::operator=(edit_distance_unbanded_score_matrix_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::operator=(edit_distance_unbanded_trace_matrix_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::operator=(edit_distance_unbanded_trace_matrix_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_max_errors_policy::operator=(edit_distance_unbanded_max_errors_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_max_errors_policy::operator=(edit_distance_unbanded_max_errors_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
prev_last_active_cell() noexcept | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | inlineprotected |
query | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
seqan3::query_alphabet_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::query_alphabet_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::query_alphabet_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::query_alphabet_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::query_alphabet_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::query_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::query_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::query_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::query_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::query_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::result_value_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::result_value_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::result_value_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::result_value_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::result_value_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::score() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inline |
seqan3::detail::edit_distance_unbanded_semi_global_policy::score() const noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inline |
seqan3::score_init() noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inlineprotected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::score_init() noexcept | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | inlineprotected |
score_mask | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
score_matrix() const noexcept | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | inline |
score_matrix_init() | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | inlineprotected |
seqan3::score_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::score_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::score_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::score_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::score_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::score_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::score_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::score_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::score_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::score_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
small_patterns() | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | inlineprivate |
trace_matrix() const noexcept | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inline |
trace_matrix_init(size_t block_count) | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inlineprotected |
seqan3::trace_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::trace_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::trace_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::trace_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::trace_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::update_best_score() noexcept | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | inlineprotected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::update_best_score() noexcept | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | inlineprotected |
update_last_active_cell() noexcept | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | inlineprotected |
seqan3::use_max_errors | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::use_max_errors | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::use_max_errors | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::use_max_errors | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::use_max_errors | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
vn | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
vn0 | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | privatestatic |
vp | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | private |
vp0 | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | privatestatic |
seqan3::word_size | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_semi_global_policy::word_size | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::word_size | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::word_size | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::detail::edit_distance_unbanded_max_errors_policy::word_size | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
seqan3::word_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_semi_global_policy::word_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_score_matrix_policy::word_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::word_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
seqan3::detail::edit_distance_unbanded_max_errors_policy::word_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
~edit_distance_unbanded()=default | seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > | |
seqan3::~edit_distance_unbanded_global_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
seqan3::detail::edit_distance_unbanded_semi_global_policy::~edit_distance_unbanded_global_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits > | protected |
~edit_distance_unbanded_max_errors_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits > | protected |
~edit_distance_unbanded_score_matrix_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits > | protected |
~edit_distance_unbanded_semi_global_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits > | protected |
~edit_distance_unbanded_trace_matrix_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |