SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits > Member List

This is the complete list of members for seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >, including all inherited members.

seqan3::_best_scoreseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::_best_scoreseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
_best_score_colseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
_scoreseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
_score_matrixseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >protected
_trace_matrixseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
add_state()seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
advance_score(word_type P, word_type N, word_type mask) noexceptseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
seqan3::align_config_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::align_config_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::align_config_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::align_config_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::align_config_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
alignment() const noexceptseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >inline
seqan3::alignment_result_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::alignment_result_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::alignment_result_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::alignment_result_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::alignment_result_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::alignment_traits_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::alignment_traits_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::alignment_traits_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::alignment_traits_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::alignment_traits_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
base_t typedefseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
begin_positions() const noexceptseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >inline
bit_masksseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
compute()seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
seqan3::compute_begin_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_begin_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_begin_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_begin_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_begin_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
compute_empty_query_sequence()seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
seqan3::compute_end_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_end_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_end_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_end_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_end_positionsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
compute_kernel(compute_state &state, size_t const block_offset, size_t const current_block) noexceptseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
seqan3::compute_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::compute_scoreseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_scoreseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_scoreseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_scoreseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_scoreseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::compute_score_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_score_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_score_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_score_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_score_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::compute_sequence_alignmentseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_sequence_alignmentseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_sequence_alignmentseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_sequence_alignmentseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_sequence_alignmentseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
compute_step(compute_state &state) noexceptseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivatestatic
seqan3::compute_trace_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::compute_trace_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::compute_trace_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::compute_trace_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::compute_trace_matrixseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
configseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
databaseseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
database_itseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
database_it_endseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
seqan3::database_iterator typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::database_iterator typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::database_iterator typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::database_iterator typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::database_iterator typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::database_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::database_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::database_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::database_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::database_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
dbseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
seqan3::derived_tseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::derived_tseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_score_matrix_policy::derived_tseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::derived_tseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_max_errors_policy::derived_tseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
edit_distance_unbanded()=deleteseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
edit_distance_unbanded(edit_distance_unbanded const &)=defaultseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
edit_distance_unbanded(edit_distance_unbanded &&)=defaultseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
edit_distance_unbanded(database_t _database, query_t _query, align_config_t _config, edit_traits const &_traits)seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inline
edit_distance_unbanded(database_t &&database, query_t &&query, config_t config, traits_t) -> edit_distance_unbanded< database_t, query_t, config_t, traits_t >seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >related
edit_distance_unbanded_global_policyseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >friend
seqan3::detail::edit_distance_unbanded_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_global_policy(edit_distance_unbanded_global_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
edit_distance_unbanded_max_errors_policyseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >friend
seqan3::detail::edit_distance_unbanded_max_errors_policy::edit_distance_unbanded_max_errors_policy(edit_distance_unbanded_max_errors_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_max_errors_policy::edit_distance_unbanded_max_errors_policy(edit_distance_unbanded_max_errors_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
edit_distance_unbanded_score_matrix_policyseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >friend
seqan3::detail::edit_distance_unbanded_score_matrix_policy::edit_distance_unbanded_score_matrix_policy(edit_distance_unbanded_score_matrix_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_score_matrix_policy::edit_distance_unbanded_score_matrix_policy(edit_distance_unbanded_score_matrix_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >protected
edit_distance_unbanded_semi_global_policyseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >friend
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_semi_global_policy(edit_distance_unbanded_semi_global_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::edit_distance_unbanded_semi_global_policy(edit_distance_unbanded_semi_global_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
edit_distance_unbanded_trace_matrix_policyseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >friend
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::edit_distance_unbanded_trace_matrix_policy(edit_distance_unbanded_trace_matrix_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::edit_distance_unbanded_trace_matrix_policy(edit_distance_unbanded_trace_matrix_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
seqan3::end_positions() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inline
seqan3::detail::edit_distance_unbanded_semi_global_policy::end_positions() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inline
seqan3::end_positions_first() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inlineprotected
seqan3::detail::edit_distance_unbanded_semi_global_policy::end_positions_first() const noexceptseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >inlineprotected
hn0seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >privatestatic
hpseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
hp0seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >privatestatic
seqan3::invalid_coordinate() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inlineprotected
seqan3::detail::edit_distance_unbanded_semi_global_policy::invalid_coordinate() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inlineprotected
seqan3::is_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::is_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::is_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::is_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::is_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
is_last_active_cell_within_last_row() const noexceptseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >inlineprotected
seqan3::is_semi_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::is_semi_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::is_semi_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::is_semi_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::is_semi_globalseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::is_valid() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inlineprotected
seqan3::detail::edit_distance_unbanded_semi_global_policy::is_valid() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inlineprotected
large_patterns()seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
last_blockseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
last_score_maskseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
max_errorsseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
max_errors_init(size_t block_count) noexceptseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >inlineprotected
max_rows(word_type const score_mask, unsigned const last_block, score_type const score, score_type const max_errors) noexceptseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >inlineprotectedstatic
next_last_active_cell() noexceptseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >inlineprotected
on_hit() noexceptseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
operator()(size_t const idx, callback_t &&callback)seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inline
operator=(edit_distance_unbanded const &)=defaultseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
operator=(edit_distance_unbanded &&)=defaultseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::operator=(edit_distance_unbanded_semi_global_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::operator=(edit_distance_unbanded_semi_global_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_global_policy::operator=(edit_distance_unbanded_global_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_score_matrix_policy::operator=(edit_distance_unbanded_score_matrix_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_score_matrix_policy::operator=(edit_distance_unbanded_score_matrix_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::operator=(edit_distance_unbanded_trace_matrix_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::operator=(edit_distance_unbanded_trace_matrix_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_max_errors_policy::operator=(edit_distance_unbanded_max_errors_policy const &) noexcept=defaultseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_max_errors_policy::operator=(edit_distance_unbanded_max_errors_policy &&) noexcept=defaultseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
prev_last_active_cell() noexceptseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >inlineprotected
queryseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
seqan3::query_alphabet_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::query_alphabet_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::query_alphabet_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::query_alphabet_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::query_alphabet_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::query_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::query_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::query_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::query_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::query_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::result_value_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::result_value_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::result_value_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::result_value_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::result_value_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::score() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inline
seqan3::detail::edit_distance_unbanded_semi_global_policy::score() const noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inline
seqan3::score_init() noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inlineprotected
seqan3::detail::edit_distance_unbanded_semi_global_policy::score_init() noexceptseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >inlineprotected
score_maskseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
score_matrix() const noexceptseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >inline
score_matrix_init()seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >inlineprotected
seqan3::score_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::score_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::score_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::score_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::score_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::score_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::score_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::score_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::score_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::score_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
small_patterns()seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >inlineprivate
trace_matrix() const noexceptseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >inline
trace_matrix_init(size_t block_count)seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >inlineprotected
seqan3::trace_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::trace_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::trace_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::trace_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::trace_matrix_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::update_best_score() noexceptseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >inlineprotected
seqan3::detail::edit_distance_unbanded_semi_global_policy::update_best_score() noexceptseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >inlineprotected
update_last_active_cell() noexceptseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >inlineprotected
seqan3::use_max_errorsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::use_max_errorsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::use_max_errorsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::use_max_errorsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::use_max_errorsseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
vnseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
vn0seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >privatestatic
vpseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >private
vp0seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >privatestatic
seqan3::word_sizeseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_semi_global_policy::word_sizeseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_score_matrix_policy::word_sizeseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::word_sizeseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::detail::edit_distance_unbanded_max_errors_policy::word_sizeseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >static
seqan3::word_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_semi_global_policy::word_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_score_matrix_policy::word_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_trace_matrix_policy::word_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
seqan3::detail::edit_distance_unbanded_max_errors_policy::word_type typedefseqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
~edit_distance_unbanded()=defaultseqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
seqan3::~edit_distance_unbanded_global_policy() noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
seqan3::detail::edit_distance_unbanded_semi_global_policy::~edit_distance_unbanded_global_policy() noexcept=defaultseqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >protected
~edit_distance_unbanded_max_errors_policy() noexcept=defaultseqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >protected
~edit_distance_unbanded_score_matrix_policy() noexcept=defaultseqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >protected
~edit_distance_unbanded_semi_global_policy() noexcept=defaultseqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >protected
~edit_distance_unbanded_trace_matrix_policy() noexcept=defaultseqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >protected
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