_trace_matrix | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
align_config_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
alignment() const noexcept | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inline |
alignment_result_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
alignment_traits_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
begin_positions() const noexcept | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inline |
compute_begin_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_end_positions | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_score | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_score_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_sequence_alignment | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
compute_trace_matrix | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
database_iterator typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
database_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
db | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
derived_t | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded_trace_matrix_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded_trace_matrix_policy(edit_distance_unbanded_trace_matrix_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
edit_distance_unbanded_trace_matrix_policy(edit_distance_unbanded_trace_matrix_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
hp | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
is_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
is_semi_global | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
operator=(edit_distance_unbanded_trace_matrix_policy const &) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
operator=(edit_distance_unbanded_trace_matrix_policy &&) noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |
query_alphabet_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
query_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
result_value_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
score_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
score_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
trace_matrix() const noexcept | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inline |
trace_matrix_init(size_t block_count) | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | inlineprotected |
trace_matrix_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
use_max_errors | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
word_size | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | static |
word_type typedef | seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t > | |
~edit_distance_unbanded_trace_matrix_policy() noexcept=default | seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits > | protected |