SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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This is the complete list of members for seqan3::detail::format_sam_base, including all inherited members.
arithmetic_buffer | seqan3::detail::format_sam_base | protected |
check_and_assign_ref_id(ref_id_type &ref_id, ref_id_tmp_type &ref_id_tmp, header_type &header, ref_seqs_type &) | seqan3::detail::format_sam_base | inlineprotected |
format_sam_base()=default | seqan3::detail::format_sam_base | protected |
format_sam_base(format_sam_base const &)=default | seqan3::detail::format_sam_base | protected |
format_sam_base(format_sam_base &&)=default | seqan3::detail::format_sam_base | protected |
format_version | seqan3::detail::format_sam_base | protectedstatic |
header_was_written | seqan3::detail::format_sam_base | protected |
operator=(format_sam_base const &)=default | seqan3::detail::format_sam_base | protected |
operator=(format_sam_base &&)=default | seqan3::detail::format_sam_base | protected |
read_arithmetic_field(std::string_view const &str, arithmetic_target_type &arithmetic_target) | seqan3::detail::format_sam_base | inlineprotected |
read_forward_range_field(stream_view_type &&stream_view, target_range_type &target) | seqan3::detail::format_sam_base | inlineprotected |
read_forward_range_field(std::string_view const str, target_range_type &target) | seqan3::detail::format_sam_base | inlineprotected |
read_header(stream_view_type &&stream_view, sam_file_header< ref_ids_type > &hdr, ref_seqs_type &, sam_file_input_options< seq_legal_alph_type > const &options) | seqan3::detail::format_sam_base | inlineprotected |
ref_info_present_in_header | seqan3::detail::format_sam_base | protected |
soft_clipping_at_front(std::vector< cigar > const &cigar_vector) const | seqan3::detail::format_sam_base | inlineprotected |
write_header(stream_t &stream, sam_file_output_options const &options, header_type &header) | seqan3::detail::format_sam_base | inlineprotected |
~format_sam_base()=default | seqan3::detail::format_sam_base | protected |