SeqAn3 3.1.0-rc.2
The Modern C++ library for sequence analysis.
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at:
6// -----------------------------------------------------------------------------------------------------
13#pragma once
20namespace seqan3::align_cfg
52 gap_cost_affine{open_score{0}, extension_score{-1}};
54} // namespace seqan3
Provides seqan3::align_config::gap_cost_affine.
Provides seqan3::align_cfg::scoring_scheme.
Sets the scoring scheme for the alignment algorithm.
Definition: align_config_scoring_scheme.hpp:45
Collection of elements to configure an algorithm.
Definition: configuration.hpp:45
A data structure for managing and computing the score of two nucleotides.
Definition: nucleotide_scoring_scheme.hpp:38
Provides seqan3::configuration and utility functions.
constexpr configuration edit_scheme
Shortcut for edit distance configuration.
Definition: align_config_edit.hpp:51
A special sub namespace for the alignment configurations.
Definition: align_config_band.hpp:25
Provides seqan3::nucleotide_scoring_scheme.