align_config_edit.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2019, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2019, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------

#pragma once

#include <seqan3/alignment/configuration/align_config_gap.hpp>
#include <seqan3/alignment/configuration/align_config_mode.hpp>
#include <seqan3/alignment/configuration/align_config_scoring.hpp>
#include <seqan3/alignment/scoring/gap_scheme.hpp>
#include <seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp>
#include <seqan3/core/algorithm/configuration.hpp>

namespace seqan3::align_cfg
{

inline constexpr configuration edit = mode{global_alignment} | scoring{nucleotide_scoring_scheme{}} |
                                      gap{gap_scheme{gap_score{-1}}};

} // namespace seqan3