SeqAn3  3.0.0
The Modern C++ library for sequence analysis.
all.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2019, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2019, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
13  #pragma once
14 
15 #include <seqan3/alignment/configuration/align_config_aligned_ends.hpp>
16 #include <seqan3/alignment/configuration/align_config_band.hpp>
17 #include <seqan3/alignment/configuration/align_config_edit.hpp>
18 #include <seqan3/alignment/configuration/align_config_gap.hpp>
19 #include <seqan3/alignment/configuration/align_config_max_error.hpp>
20 #include <seqan3/alignment/configuration/align_config_mode.hpp>
21 #include <seqan3/alignment/configuration/align_config_result.hpp>
22 #include <seqan3/alignment/configuration/align_config_scoring.hpp>
23 #include <seqan3/alignment/configuration/detail.hpp>
24 
align_config_max_error.hpp
Provides seqan3::align_cfg::max_error configuration.
align_config_mode.hpp
Provides global alignment configurations.
align_config_aligned_ends.hpp
Provides seqan3::align_cfg::aligned_ends.
align_config_gap.hpp
Provides seqan3::align_config::gap.
detail.hpp
Provides some utility functions for the alignment configurations.
align_config_band.hpp
Provides seqan3::detail::align_config_band.
align_config_scoring.hpp
Provides seqan3::align_cfg::scoring.
align_config_result.hpp
Provides configuration for alignment output.
align_config_edit.hpp
Provides seqan3::align_cfg::edit.