detail.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2019, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2019, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------

#pragma once

#include <seqan3/core/algorithm/configuration_utility.hpp>

namespace seqan3::detail
{

enum struct align_config_id : uint8_t
{
    aligned_ends, 
    band,         
    gap,          
    global,       
    local,        
    max_error,    
    result,       
    scoring,      
    SIZE          
};

// ----------------------------------------------------------------------------
// compatibility_table
// ----------------------------------------------------------------------------

template <>
inline constexpr std::array<std::array<bool, static_cast<uint8_t>(align_config_id::SIZE)>,
                            static_cast<uint8_t>(align_config_id::SIZE)> compatibility_table<align_config_id>
{
    {   //0  1  2  3  4, 5  6  7
        { 0, 1, 1, 1, 0, 1, 1, 1}, // 0: aligned_ends
        { 1, 0, 1, 1, 1, 1, 1, 1}, // 1: band
        { 1, 1, 0, 1, 1, 1, 1, 1}, // 2: gap
        { 1, 1, 1, 0, 0, 1, 1, 1}, // 3: global
        { 0, 1, 1, 0, 0, 0, 1, 1}, // 4: local
        { 1, 1, 1, 1, 0, 0, 1, 1}, // 5: max_error
        { 1, 1, 1, 1, 1, 1, 0, 1}, // 6: result
        { 1, 1, 1, 1, 1, 1, 1, 0}  // 7: scoring
    }
};

} // namespace seqan3::detail